Variant report

Variant	rs6860632
Chromosome Location	chr5:92804634-92804635
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17083191	0.88[AMR][1000 genomes]
rs17083194	0.88[AMR][1000 genomes]
rs17083200	0.88[AMR][1000 genomes]
rs1824153	0.88[AMR][1000 genomes]
rs2083227	0.94[AMR][1000 genomes]
rs6556823	0.94[AMR][1000 genomes]
rs6556824	0.88[AMR][1000 genomes]
rs6866771	0.91[AMR][1000 genomes]
rs6880843	0.97[AMR][1000 genomes]
rs73133282	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830402	chr5:92703901-92847345	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92788400-92814200	Weak transcription	Ovary	ovary
2	chr5:92799600-92811600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:92799600-92825400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr5:92799600-92826000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr5:92800000-92814600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:92800600-92814600	Weak transcription	Fetal Lung	lung
7	chr5:92800600-92814600	Weak transcription	NH-A	brain
8	chr5:92800800-92805200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:92800800-92813800	Weak transcription	Fetal Kidney	kidney
10	chr5:92800800-92814800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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