Variant report

Variant	rs6866771
Chromosome Location	chr5:92835972-92835973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10041792	0.88[JPT][hapmap]
rs1004941	0.88[JPT][hapmap]
rs10060331	0.86[JPT][hapmap]
rs10067541	0.88[JPT][hapmap]
rs10071040	0.88[JPT][hapmap]
rs1038686	0.86[JPT][hapmap]
rs1046217	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10514376	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11135388	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11951859	0.89[EUR][1000 genomes]
rs11952115	0.90[EUR][1000 genomes]
rs11952600	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11960608	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12186735	0.93[ASN][1000 genomes]
rs12187239	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188716	0.93[ASN][1000 genomes]
rs12188845	0.91[EUR][1000 genomes]
rs12188905	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370977	0.94[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1457101	0.92[EUR][1000 genomes]
rs17082127	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17082129	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17083145	0.89[EUR][1000 genomes]
rs17083155	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17083181	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17083191	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083194	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083198	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083200	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083213	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083228	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083278	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17083297	0.86[JPT][hapmap]
rs17370695	0.93[ASN][1000 genomes]
rs1824153	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1844343	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2083227	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2279473	0.93[ASN][1000 genomes]
rs2344387	0.91[EUR][1000 genomes]
rs3776601	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs55861967	0.89[EUR][1000 genomes]
rs57165666	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57690257	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59360932	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61324921	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61352323	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6556823	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6556824	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6556826	0.81[EUR][1000 genomes]
rs6556829	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs6860632	0.91[AMR][1000 genomes]
rs6879816	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6880843	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6884138	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6889857	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6890998	0.86[JPT][hapmap]
rs73133214	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73133217	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73133226	0.94[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73133228	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73133239	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73133251	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133254	0.89[EUR][1000 genomes]
rs73133258	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73133261	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133265	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133275	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133278	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133280	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133282	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133283	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133287	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133289	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133292	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133301	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73135313	0.86[EUR][1000 genomes]
rs73135320	0.93[ASN][1000 genomes]
rs73135321	0.93[ASN][1000 genomes]
rs73772907	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7712388	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7712899	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7715034	0.90[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7717718	0.88[JPT][hapmap]
rs7721168	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7721509	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7727107	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7736624	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9314086	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830402	chr5:92703901-92847345	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92815200-92859200	Weak transcription	Fetal Brain Male	brain
2	chr5:92816200-92839200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:92823200-92837800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:92823600-92839200	Weak transcription	HSMMtube	muscle
5	chr5:92824600-92836200	Weak transcription	Fetal Brain Female	brain
6	chr5:92825200-92839000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:92826600-92839200	Weak transcription	HSMM	muscle
8	chr5:92827000-92838200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:92827000-92839200	Weak transcription	NHLF	lung
10	chr5:92827000-92858200	Weak transcription	Ovary	ovary
11	chr5:92827200-92839200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr5:92827200-92851600	Weak transcription	Fetal Kidney	kidney
13	chr5:92827200-92858200	Weak transcription	Fetal Stomach	stomach
14	chr5:92827600-92838400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr5:92827600-92838800	Weak transcription	Osteobl	bone
16	chr5:92827600-92839200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr5:92833000-92839000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr5:92833400-92838000	Weak transcription	NH-A	brain
19	chr5:92833600-92839200	Weak transcription	HUVEC	blood vessel
20	chr5:92833800-92839200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr5:92835000-92838000	Strong transcription	Muscle Satellite Cultured Cells	--
22	chr5:92835400-92836200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr5:92835600-92836200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr5:92835800-92836200	Enhancers	Brain Germinal Matrix	brain
25	chr5:92835800-92837600	Weak transcription	Fetal Lung	lung

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