Variant report

Variant	rs73133254
Chromosome Location	chr5:92825137-92825138
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11135388	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11951859	0.95[EUR][1000 genomes]
rs11952115	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11952600	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11960608	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12187239	0.88[EUR][1000 genomes]
rs12188845	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12188905	0.84[EUR][1000 genomes]
rs1370977	0.88[EUR][1000 genomes]
rs1457101	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17082127	0.90[EUR][1000 genomes]
rs17082129	0.90[EUR][1000 genomes]
rs17083145	0.95[EUR][1000 genomes]
rs17083155	0.85[EUR][1000 genomes]
rs17083181	0.90[EUR][1000 genomes]
rs17083191	0.89[EUR][1000 genomes]
rs17083194	0.90[EUR][1000 genomes]
rs17083198	0.90[EUR][1000 genomes]
rs17083200	0.90[EUR][1000 genomes]
rs17083213	0.88[EUR][1000 genomes]
rs17083228	0.85[EUR][1000 genomes]
rs1824153	0.90[EUR][1000 genomes]
rs1844343	0.85[EUR][1000 genomes]
rs2083227	0.90[EUR][1000 genomes]
rs2344387	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55861967	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57165666	0.88[EUR][1000 genomes]
rs57690257	0.90[EUR][1000 genomes]
rs59360932	0.88[EUR][1000 genomes]
rs61324921	0.90[EUR][1000 genomes]
rs61352323	0.88[EUR][1000 genomes]
rs6556823	0.90[EUR][1000 genomes]
rs6556824	0.90[EUR][1000 genomes]
rs6556826	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6866771	0.89[EUR][1000 genomes]
rs6879816	0.88[EUR][1000 genomes]
rs6880843	0.88[EUR][1000 genomes]
rs73133214	0.88[EUR][1000 genomes]
rs73133217	0.88[EUR][1000 genomes]
rs73133226	0.88[EUR][1000 genomes]
rs73133228	0.88[EUR][1000 genomes]
rs73133239	0.90[EUR][1000 genomes]
rs73133251	0.90[EUR][1000 genomes]
rs73133258	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73133261	0.90[EUR][1000 genomes]
rs73133265	0.89[EUR][1000 genomes]
rs73133275	0.90[EUR][1000 genomes]
rs73133278	0.90[EUR][1000 genomes]
rs73133280	0.90[EUR][1000 genomes]
rs73133282	0.88[EUR][1000 genomes]
rs73133283	0.88[EUR][1000 genomes]
rs73133287	0.88[EUR][1000 genomes]
rs73133301	0.83[EUR][1000 genomes]
rs73135313	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73772907	0.83[EUR][1000 genomes]
rs7712899	0.83[EUR][1000 genomes]
rs7715034	0.88[EUR][1000 genomes]
rs7727107	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830402	chr5:92703901-92847345	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92799600-92825400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr5:92799600-92826000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:92812800-92826000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:92815000-92826000	Weak transcription	Fetal Kidney	kidney
5	chr5:92815200-92859200	Weak transcription	Fetal Brain Male	brain
6	chr5:92815400-92826000	Weak transcription	NH-A	brain
7	chr5:92816000-92825400	Weak transcription	Osteobl	bone
8	chr5:92816200-92839200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:92818200-92826200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr5:92819000-92826200	Weak transcription	Fetal Stomach	stomach
11	chr5:92820600-92826200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr5:92821200-92826400	Weak transcription	Spleen	Spleen
13	chr5:92821800-92826200	Weak transcription	Ovary	ovary
14	chr5:92823200-92837800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:92823600-92839200	Weak transcription	HSMMtube	muscle
16	chr5:92823800-92825600	Weak transcription	Hela-S3	cervix
17	chr5:92824200-92827600	Strong transcription	Fetal Lung	lung
18	chr5:92824400-92825800	Weak transcription	NHLF	lung
19	chr5:92824400-92832000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr5:92824600-92826400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr5:92824600-92829000	Weak transcription	Brain Angular Gyrus	brain
22	chr5:92824600-92836200	Weak transcription	Fetal Brain Female	brain
23	chr5:92824800-92826000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr5:92824800-92832000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr5:92825000-92825800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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