Variant report

Variant	rs7727107
Chromosome Location	chr5:92822651-92822652
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs11135388	0.86[EUR][1000 genomes]
rs11951859	0.83[EUR][1000 genomes]
rs11952115	0.84[EUR][1000 genomes]
rs11952600	0.85[EUR][1000 genomes]
rs11960608	0.84[EUR][1000 genomes]
rs12186735	0.93[ASN][1000 genomes]
rs12187239	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188716	0.93[ASN][1000 genomes]
rs12188845	0.85[EUR][1000 genomes]
rs12188905	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370977	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1457101	0.86[EUR][1000 genomes]
rs17082127	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17082129	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17083145	0.83[EUR][1000 genomes]
rs17083155	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17083181	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17083191	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083194	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083198	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083200	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083213	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083228	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17370695	0.93[ASN][1000 genomes]
rs1824153	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1844343	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2083227	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2279473	0.93[ASN][1000 genomes]
rs2344387	0.85[EUR][1000 genomes]
rs3776601	0.93[ASN][1000 genomes]
rs55861967	0.83[EUR][1000 genomes]
rs57165666	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57690257	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59360932	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61324921	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61352323	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6556823	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6556824	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6866771	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6879816	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6880843	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6889857	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133214	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73133217	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73133226	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73133228	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73133239	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73133251	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133254	0.83[EUR][1000 genomes]
rs73133258	0.85[EUR][1000 genomes]
rs73133261	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133265	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133275	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133278	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133280	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133282	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133283	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133287	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133289	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133292	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133301	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73135313	0.81[EUR][1000 genomes]
rs73135320	0.93[ASN][1000 genomes]
rs73135321	0.93[ASN][1000 genomes]
rs73772907	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7712899	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7715034	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830402	chr5:92703901-92847345	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92799600-92825400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr5:92799600-92826000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:92812800-92826000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:92815000-92826000	Weak transcription	Fetal Kidney	kidney
5	chr5:92815200-92859200	Weak transcription	Fetal Brain Male	brain
6	chr5:92815400-92824200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:92815400-92826000	Weak transcription	NH-A	brain
8	chr5:92816000-92825400	Weak transcription	Osteobl	bone
9	chr5:92816200-92839200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:92816400-92824200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:92818200-92826200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr5:92818400-92824200	Weak transcription	Fetal Lung	lung
13	chr5:92819000-92826200	Weak transcription	Fetal Stomach	stomach
14	chr5:92820600-92826200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr5:92821200-92826400	Weak transcription	Spleen	Spleen
16	chr5:92821800-92826200	Weak transcription	Ovary	ovary

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