Variant report

Variant	rs17083145
Chromosome Location	chr5:92744850-92744851
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1004941	0.88[CHB][hapmap]
rs11135388	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11951859	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11952115	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11952600	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11960608	0.90[AFR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12187239	0.88[EUR][1000 genomes]
rs12188845	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12188905	0.84[EUR][1000 genomes]
rs1370977	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1457101	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17082127	0.90[EUR][1000 genomes]
rs17082129	0.90[EUR][1000 genomes]
rs17083155	0.90[EUR][1000 genomes]
rs17083181	0.90[EUR][1000 genomes]
rs17083191	0.89[EUR][1000 genomes]
rs17083194	0.90[EUR][1000 genomes]
rs17083198	0.90[EUR][1000 genomes]
rs17083200	0.90[EUR][1000 genomes]
rs17083213	0.88[EUR][1000 genomes]
rs17083228	0.85[EUR][1000 genomes]
rs1824153	0.90[EUR][1000 genomes]
rs1844343	1.00[CEU][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes]
rs2083227	0.90[EUR][1000 genomes]
rs2344387	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3776601	0.91[CEU][hapmap];0.86[JPT][hapmap]
rs55861967	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57165666	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57690257	0.90[EUR][1000 genomes]
rs59360932	0.88[EUR][1000 genomes]
rs61324921	0.90[EUR][1000 genomes]
rs61352323	0.88[EUR][1000 genomes]
rs6556823	0.90[EUR][1000 genomes]
rs6556824	0.90[EUR][1000 genomes]
rs6556826	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6866771	0.89[EUR][1000 genomes]
rs6879816	0.88[EUR][1000 genomes]
rs6880843	0.88[EUR][1000 genomes]
rs73133214	0.92[EUR][1000 genomes]
rs73133217	0.92[EUR][1000 genomes]
rs73133226	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73133228	0.92[EUR][1000 genomes]
rs73133239	0.90[EUR][1000 genomes]
rs73133251	0.90[EUR][1000 genomes]
rs73133254	0.95[EUR][1000 genomes]
rs73133258	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73133261	0.90[EUR][1000 genomes]
rs73133265	0.89[EUR][1000 genomes]
rs73133275	0.90[EUR][1000 genomes]
rs73133278	0.90[EUR][1000 genomes]
rs73133280	0.90[EUR][1000 genomes]
rs73133282	0.88[EUR][1000 genomes]
rs73133283	0.88[EUR][1000 genomes]
rs73133287	0.88[EUR][1000 genomes]
rs73133301	0.83[EUR][1000 genomes]
rs73135313	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73772907	0.83[EUR][1000 genomes]
rs7712899	0.83[EUR][1000 genomes]
rs7715034	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7727107	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830402	chr5:92703901-92847345	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92740000-92764400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr5:92742000-92745400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:92742400-92745400	Enhancers	Fetal Stomach	stomach
4	chr5:92742400-92746200	Enhancers	Brain Germinal Matrix	brain
5	chr5:92742400-92746200	Enhancers	Fetal Lung	lung
6	chr5:92742800-92745200	Enhancers	Adipose Nuclei	Adipose
7	chr5:92743000-92745000	Enhancers	Fetal Brain Male	brain
8	chr5:92743200-92745000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:92743400-92745000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:92743600-92799200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr5:92743800-92745200	Enhancers	Fetal Brain Female	brain
12	chr5:92743800-92745600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:92744000-92745000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr5:92744000-92753200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:92744200-92745000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr5:92744200-92745000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr5:92744200-92745200	Enhancers	Stomach Smooth Muscle	stomach
18	chr5:92744400-92745600	Enhancers	Brain Cingulate Gyrus	brain
19	chr5:92744600-92745200	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr5:92744600-92745400	Enhancers	Brain Hippocampus Middle	brain
21	chr5:92744600-92746000	Weak transcription	Ovary	ovary
22	chr5:92744600-92746400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr5:92744800-92745000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr5:92744800-92745600	Weak transcription	Brain Substantia Nigra	brain

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