Variant report

Variant	rs2083227
Chromosome Location	chr5:92815294-92815295
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs1004941	0.86[JPT][hapmap]
rs10067541	0.86[JPT][hapmap]
rs1038686	0.87[CHD][hapmap];0.86[JPT][hapmap]
rs1046217	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10514376	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11135388	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11951859	0.90[EUR][1000 genomes]
rs11952115	0.91[EUR][1000 genomes]
rs11952600	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11960608	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12186735	0.86[ASN][1000 genomes]
rs12187239	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12188716	1.00[ASN][1000 genomes]
rs12188845	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12188905	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1370977	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1457101	0.93[EUR][1000 genomes]
rs17082127	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17082129	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083145	0.90[EUR][1000 genomes]
rs17083155	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17083181	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083191	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17083194	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17083198	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17083200	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17083213	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17083228	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17083278	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs17083297	0.87[CHD][hapmap];0.86[JPT][hapmap]
rs17370695	0.86[ASN][1000 genomes]
rs1824153	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1844343	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2279473	0.86[ASN][1000 genomes]
rs2344387	0.92[EUR][1000 genomes]
rs3776601	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.86[ASN][1000 genomes]
rs55861967	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs57165666	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57690257	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59360932	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61324921	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61352323	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6556823	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6556824	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6556826	0.82[EUR][1000 genomes]
rs6556829	0.85[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs6860632	0.94[AMR][1000 genomes]
rs6866771	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6879816	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6880843	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6884138	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6889857	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73133214	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73133217	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73133226	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73133228	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133239	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133251	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73133254	0.90[EUR][1000 genomes]
rs73133258	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs73133261	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73133265	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73133275	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73133278	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73133280	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73133282	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73133283	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73133287	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73133289	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73133292	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73133301	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73135313	0.88[EUR][1000 genomes]
rs73135320	0.86[ASN][1000 genomes]
rs73135321	0.86[ASN][1000 genomes]
rs73772907	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7712388	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7712899	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7715034	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7717718	0.86[JPT][hapmap]
rs7721168	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7721509	1.00[CHB][hapmap]
rs7727107	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7736624	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830402	chr5:92703901-92847345	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92799600-92825400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr5:92799600-92826000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:92812800-92826000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:92814600-92816400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:92814600-92816600	ZNF genes & repeats	Fetal Lung	lung
6	chr5:92814800-92815400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:92815000-92815600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:92815000-92826000	Weak transcription	Fetal Kidney	kidney
9	chr5:92815200-92859200	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links