Variant report

Variant	rs73135313
Chromosome Location	chr5:92912207-92912208
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:92910337..92912494-chr5:92915588..92917901,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000237187	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11135388	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11951859	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11952115	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11952600	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11960608	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12187239	0.90[EUR][1000 genomes]
rs12188845	0.93[EUR][1000 genomes]
rs12188905	0.86[EUR][1000 genomes]
rs1370977	0.85[EUR][1000 genomes]
rs1457101	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17082127	0.88[EUR][1000 genomes]
rs17082129	0.88[EUR][1000 genomes]
rs17083145	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17083155	0.83[EUR][1000 genomes]
rs17083181	0.88[EUR][1000 genomes]
rs17083191	0.86[EUR][1000 genomes]
rs17083194	0.88[EUR][1000 genomes]
rs17083198	0.88[EUR][1000 genomes]
rs17083200	0.88[EUR][1000 genomes]
rs17083213	0.90[EUR][1000 genomes]
rs17083228	0.92[EUR][1000 genomes]
rs1824153	0.88[EUR][1000 genomes]
rs1844343	0.92[EUR][1000 genomes]
rs2083227	0.88[EUR][1000 genomes]
rs2344387	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55861967	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57165666	0.85[EUR][1000 genomes]
rs57690257	0.88[EUR][1000 genomes]
rs59360932	0.90[EUR][1000 genomes]
rs61324921	0.88[EUR][1000 genomes]
rs61352323	0.90[EUR][1000 genomes]
rs6556823	0.88[EUR][1000 genomes]
rs6556824	0.88[EUR][1000 genomes]
rs6556826	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6866771	0.86[EUR][1000 genomes]
rs6879816	0.90[EUR][1000 genomes]
rs6880843	0.85[EUR][1000 genomes]
rs6889857	0.85[EUR][1000 genomes]
rs73133214	0.85[EUR][1000 genomes]
rs73133217	0.85[EUR][1000 genomes]
rs73133226	0.85[EUR][1000 genomes]
rs73133228	0.85[EUR][1000 genomes]
rs73133239	0.88[EUR][1000 genomes]
rs73133251	0.88[EUR][1000 genomes]
rs73133254	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73133258	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73133261	0.88[EUR][1000 genomes]
rs73133265	0.86[EUR][1000 genomes]
rs73133275	0.88[EUR][1000 genomes]
rs73133278	0.88[EUR][1000 genomes]
rs73133280	0.88[EUR][1000 genomes]
rs73133282	0.90[EUR][1000 genomes]
rs73133283	0.90[EUR][1000 genomes]
rs73133287	0.90[EUR][1000 genomes]
rs73133301	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73772907	0.90[EUR][1000 genomes]
rs7712899	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7715034	0.85[EUR][1000 genomes]
rs7727107	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451945	chr5:92858750-93024740	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv830404	chr5:92868336-93048257	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	esv1819334	chr5:92892591-92956733	Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv882383	chr5:92895401-92928346	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv823130	chr5:92896346-92966016	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv4918	chr5:92898426-92943359	Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv823132	chr5:92898512-92969668	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92900800-92914400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr5:92908800-92914200	Weak transcription	HSMM	muscle
3	chr5:92909000-92914000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:92909000-92914400	Weak transcription	HUVEC	blood vessel
5	chr5:92909000-92914400	Weak transcription	Osteobl	bone
6	chr5:92909200-92914000	Weak transcription	Brain Angular Gyrus	brain
7	chr5:92909200-92914400	Weak transcription	Adipose Nuclei	Adipose
8	chr5:92909200-92914600	Weak transcription	HMEC	breast
9	chr5:92909200-92914800	Weak transcription	Pancreas	Pancrea
10	chr5:92909400-92914600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:92909800-92913000	Weak transcription	NHDF-Ad	bronchial
12	chr5:92910000-92912800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr5:92910000-92913800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr5:92910000-92914000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:92910200-92912800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:92910200-92913400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:92910200-92913800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr5:92910800-92913000	Weak transcription	Ovary	ovary
19	chr5:92911000-92912800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:92911000-92912800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr5:92911400-92912400	Weak transcription	Fetal Stomach	stomach
22	chr5:92911400-92913200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
23	chr5:92911600-92912800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr5:92911600-92912800	Weak transcription	NH-A	brain
25	chr5:92911600-92913000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr5:92911800-92913800	Enhancers	Muscle Satellite Cultured Cells	--
27	chr5:92912000-92912400	Flanking Bivalent TSS/Enh	Fetal Lung	lung
28	chr5:92912000-92913400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr5:92912200-92912400	Active TSS	Fetal Brain Female	brain
30	chr5:92912200-92912600	Flanking Active TSS	Fetal Kidney	kidney
31	chr5:92912200-92912600	Flanking Active TSS	NHLF	lung

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