Variant report

Variant	rs73133258
Chromosome Location	chr5:92828286-92828287
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11135388	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11951859	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11952115	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11952600	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11960608	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12187239	0.90[EUR][1000 genomes]
rs12188845	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12188905	0.86[EUR][1000 genomes]
rs1370977	0.90[EUR][1000 genomes]
rs1457101	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17082127	0.92[EUR][1000 genomes]
rs17082129	0.92[EUR][1000 genomes]
rs17083145	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17083155	0.88[EUR][1000 genomes]
rs17083181	0.92[EUR][1000 genomes]
rs17083191	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs17083194	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17083198	0.92[EUR][1000 genomes]
rs17083200	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17083213	0.90[EUR][1000 genomes]
rs17083228	0.88[EUR][1000 genomes]
rs1824153	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1844343	0.88[EUR][1000 genomes]
rs2083227	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2344387	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55861967	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57165666	0.90[EUR][1000 genomes]
rs57690257	0.92[EUR][1000 genomes]
rs59360932	0.90[EUR][1000 genomes]
rs61324921	0.92[EUR][1000 genomes]
rs61352323	0.90[EUR][1000 genomes]
rs6556823	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6556824	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6556826	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6866771	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6879816	0.90[EUR][1000 genomes]
rs6880843	0.90[EUR][1000 genomes]
rs6889857	0.81[EUR][1000 genomes]
rs73133214	0.90[EUR][1000 genomes]
rs73133217	0.90[EUR][1000 genomes]
rs73133226	0.90[EUR][1000 genomes]
rs73133228	0.90[EUR][1000 genomes]
rs73133239	0.92[EUR][1000 genomes]
rs73133251	0.92[EUR][1000 genomes]
rs73133254	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73133261	0.92[EUR][1000 genomes]
rs73133265	0.91[EUR][1000 genomes]
rs73133275	0.92[EUR][1000 genomes]
rs73133278	0.92[EUR][1000 genomes]
rs73133280	0.92[EUR][1000 genomes]
rs73133282	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs73133283	0.90[EUR][1000 genomes]
rs73133287	0.90[EUR][1000 genomes]
rs73133289	0.82[EUR][1000 genomes]
rs73133292	0.81[EUR][1000 genomes]
rs73133301	0.85[EUR][1000 genomes]
rs73135313	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73772907	0.85[EUR][1000 genomes]
rs7712899	0.85[EUR][1000 genomes]
rs7715034	0.90[EUR][1000 genomes]
rs7727107	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830402	chr5:92703901-92847345	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92815200-92859200	Weak transcription	Fetal Brain Male	brain
2	chr5:92816200-92839200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:92823200-92837800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:92823600-92839200	Weak transcription	HSMMtube	muscle
5	chr5:92824400-92832000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:92824600-92829000	Weak transcription	Brain Angular Gyrus	brain
7	chr5:92824600-92836200	Weak transcription	Fetal Brain Female	brain
8	chr5:92824800-92832000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr5:92825200-92839000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:92826600-92839200	Weak transcription	HSMM	muscle
11	chr5:92826800-92832400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr5:92827000-92829000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:92827000-92832800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:92827000-92832800	Weak transcription	NH-A	brain
15	chr5:92827000-92838200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:92827000-92839200	Weak transcription	NHLF	lung
17	chr5:92827000-92858200	Weak transcription	Ovary	ovary
18	chr5:92827200-92830000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:92827200-92830000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr5:92827200-92835800	Weak transcription	Brain Germinal Matrix	brain
21	chr5:92827200-92839200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr5:92827200-92851600	Weak transcription	Fetal Kidney	kidney
23	chr5:92827200-92858200	Weak transcription	Fetal Stomach	stomach
24	chr5:92827600-92829600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr5:92827600-92832400	Weak transcription	Fetal Lung	lung
26	chr5:92827600-92838400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr5:92827600-92838800	Weak transcription	Osteobl	bone
28	chr5:92827600-92839200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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