Variant report

Variant	rs57165666
Chromosome Location	chr5:92773066-92773067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs11135388	0.91[EUR][1000 genomes]
rs11951859	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11952115	0.89[EUR][1000 genomes]
rs11952600	0.90[EUR][1000 genomes]
rs11960608	0.89[EUR][1000 genomes]
rs12187239	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12188716	0.93[ASN][1000 genomes]
rs12188845	0.90[EUR][1000 genomes]
rs12188905	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1370977	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1457101	0.91[EUR][1000 genomes]
rs17082127	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17082129	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17083145	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17083155	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083181	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17083191	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17083194	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17083198	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17083200	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17083213	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17083228	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1824153	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1844343	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2083227	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2344387	0.90[EUR][1000 genomes]
rs55861967	0.88[EUR][1000 genomes]
rs57690257	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59360932	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61324921	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61352323	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6556823	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6556824	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6556826	0.80[EUR][1000 genomes]
rs6866771	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6879816	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6880843	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6889857	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73133214	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133217	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133226	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133228	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73133239	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73133251	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73133254	0.88[EUR][1000 genomes]
rs73133258	0.90[EUR][1000 genomes]
rs73133261	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73133265	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73133275	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73133278	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73133280	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73133282	0.92[AFR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73133283	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73133287	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73133289	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73133292	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73133301	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73135313	0.85[EUR][1000 genomes]
rs73772907	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7712899	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7715034	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7727107	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830402	chr5:92703901-92847345	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92743600-92799200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:92754000-92775600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:92758200-92777800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:92759200-92773800	Weak transcription	Ovary	ovary
5	chr5:92760200-92798000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:92761400-92775000	Weak transcription	NHLF	lung
7	chr5:92761400-92778400	Weak transcription	Fetal Kidney	kidney
8	chr5:92761600-92773800	Weak transcription	Brain Substantia Nigra	brain
9	chr5:92765400-92775000	Weak transcription	Fetal Brain Female	brain
10	chr5:92766800-92774000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:92767400-92776400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:92767400-92777800	Weak transcription	Fetal Stomach	stomach
13	chr5:92767400-92797000	Weak transcription	Fetal Brain Male	brain
14	chr5:92767800-92776800	Weak transcription	Fetal Lung	lung
15	chr5:92769600-92774400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr5:92769800-92779200	Weak transcription	Osteobl	bone
17	chr5:92770000-92777600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr5:92770000-92797800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr5:92770200-92774000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr5:92771400-92779200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr5:92771600-92773800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr5:92772000-92778800	Weak transcription	NH-A	brain

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