Variant report

Variant	rs6862785
Chromosome Location	chr5:74179330-74179331
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10942721	0.91[AFR][1000 genomes]
rs11738903	0.83[ASN][1000 genomes]
rs11745011	0.91[AFR][1000 genomes]
rs58010984	0.83[ASN][1000 genomes]
rs62367771	0.82[ASN][1000 genomes]
rs62367773	0.83[ASN][1000 genomes]
rs62367774	0.83[ASN][1000 genomes]
rs62367819	0.81[ASN][1000 genomes]
rs6453088	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6863199	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6872607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9686818	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518286	chr5:74169045-74243120	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv968210	chr5:74173768-74181141	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74174000-74181000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:74176400-74181000	Weak transcription	HepG2	liver
3	chr5:74178200-74180000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr5:74178200-74180000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr5:74178200-74180200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr5:74178400-74179600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr5:74178400-74180000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr5:74178400-74180200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr5:74178600-74179800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr5:74179000-74179600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr5:74179200-74179800	Enhancers	H9 Cell Line	embryonic stem cell
12	chr5:74179200-74179800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links