Variant report

Variant	rs6864143
Chromosome Location	chr5:111941838-111941839
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10052730	0.89[ASN][1000 genomes]
rs10052739	0.89[ASN][1000 genomes]
rs10066425	0.82[ASN][1000 genomes]
rs10067709	0.89[ASN][1000 genomes]
rs11742518	0.89[ASN][1000 genomes]
rs11747396	0.89[ASN][1000 genomes]
rs12110086	0.89[ASN][1000 genomes]
rs12516949	1.00[ASN][1000 genomes]
rs12518872	0.82[ASN][1000 genomes]
rs13185746	0.89[ASN][1000 genomes]
rs4073304	0.89[ASN][1000 genomes]
rs4073305	0.89[ASN][1000 genomes]
rs4073306	0.90[ASN][1000 genomes]
rs4246013	0.82[ASN][1000 genomes]
rs4362986	0.82[ASN][1000 genomes]
rs4415120	0.82[ASN][1000 genomes]
rs4469237	0.82[ASN][1000 genomes]
rs4957652	0.84[ASN][1000 genomes]
rs4957653	0.83[ASN][1000 genomes]
rs4957654	0.89[ASN][1000 genomes]
rs4957655	0.89[ASN][1000 genomes]
rs4957657	0.90[ASN][1000 genomes]
rs4958063	0.82[ASN][1000 genomes]
rs4958065	0.82[ASN][1000 genomes]
rs4958067	0.83[ASN][1000 genomes]
rs4958069	0.81[ASN][1000 genomes]
rs61099282	0.84[ASN][1000 genomes]
rs62365791	0.90[ASN][1000 genomes]
rs6421845	0.87[ASN][1000 genomes]
rs6594619	0.84[ASN][1000 genomes]
rs6594625	0.89[ASN][1000 genomes]
rs6594627	0.89[ASN][1000 genomes]
rs6594628	0.89[ASN][1000 genomes]
rs6594629	0.89[ASN][1000 genomes]
rs6594630	0.89[ASN][1000 genomes]
rs6594631	0.89[ASN][1000 genomes]
rs6594632	0.89[ASN][1000 genomes]
rs6594633	0.89[ASN][1000 genomes]
rs6594635	0.89[ASN][1000 genomes]
rs6594640	0.93[ASN][1000 genomes]
rs6863537	0.89[ASN][1000 genomes]
rs7378752	0.98[ASN][1000 genomes]
rs7448340	0.89[ASN][1000 genomes]
rs7448452	0.89[ASN][1000 genomes]
rs7448478	0.89[ASN][1000 genomes]
rs7448522	0.89[ASN][1000 genomes]
rs7703825	0.89[ASN][1000 genomes]
rs7710128	1.00[ASN][1000 genomes]
rs7713574	0.82[ASN][1000 genomes]
rs7713733	0.82[ASN][1000 genomes]
rs7717646	0.89[ASN][1000 genomes]
rs7717938	0.89[ASN][1000 genomes]
rs7733473	0.90[ASN][1000 genomes]
rs7737751	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:45 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv20349	chr5:111915807-111944317	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv819717	chr5:111935623-111947507	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv823178	chr5:111938702-111942771	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv821026	chr5:111938702-111945437	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv599373	chr5:111938738-111944473	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv1836543	chr5:111939151-111944473	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv1836690	chr5:111939151-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv1837328	chr5:111939151-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv1837524	chr5:111939151-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv1837571	chr5:111939151-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv1837969	chr5:111939151-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv823179	chr5:111939196-111942771	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
14	nsv823180	chr5:111939337-111947460	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
15	nsv823181	chr5:111939479-111942771	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
16	nsv823182	chr5:111939479-111947460	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv16282	chr5:111939492-111944907	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
18	nsv599374	chr5:111939614-111942172	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
19	nsv599375	chr5:111939614-111942769	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
20	nsv599376	chr5:111939614-111942849	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
21	nsv599377	chr5:111939614-111943114	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
22	nsv599378	chr5:111939614-111943935	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
23	nsv599379	chr5:111939614-111944295	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
24	esv1836004	chr5:111939614-111944449	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
25	esv1838492	chr5:111939614-111944449	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
26	nsv599380	chr5:111939614-111944449	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
27	esv1836219	chr5:111939614-111944473	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
28	esv1837456	chr5:111939614-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
29	esv1839406	chr5:111939614-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
30	esv1839469	chr5:111939614-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
31	esv1840814	chr5:111939614-111944473	Weak transcription Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
32	esv1840838	chr5:111939614-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
33	nsv599381	chr5:111939614-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
34	nsv599382	chr5:111940021-111942849	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
35	nsv599383	chr5:111940021-111944295	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
36	nsv599384	chr5:111940021-111944449	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
37	nsv599385	chr5:111940373-111942849	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
38	nsv599386	chr5:111940373-111944449	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
39	nsv599387	chr5:111940373-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
40	nsv599388	chr5:111940667-111944449	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
41	esv1835627	chr5:111940667-111944473	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
42	nsv599389	chr5:111940954-111944449	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
43	nsv599390	chr5:111940954-111944473	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
44	nsv599391	chr5:111941260-111944295	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
45	nsv599392	chr5:111941816-111944449	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111941000-111943600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr5:111941000-111952600	Weak transcription	Right Atrium	heart
3	chr5:111941200-111943400	Weak transcription	Fetal Intestine Large	intestine
4	chr5:111941400-111943200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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