Variant report

Variant	rs7378752
Chromosome Location	chr5:111946854-111946855
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:111938998..111941379-chr5:111945188..111946889,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10052730	0.88[ASN][1000 genomes]
rs10052739	0.88[ASN][1000 genomes]
rs10066425	0.82[ASN][1000 genomes]
rs10067709	0.88[ASN][1000 genomes]
rs11742518	0.88[ASN][1000 genomes]
rs11747396	0.88[ASN][1000 genomes]
rs12110086	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12516949	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12518872	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13185746	0.88[ASN][1000 genomes]
rs4073304	0.88[ASN][1000 genomes]
rs4073305	0.88[ASN][1000 genomes]
rs4073306	0.89[ASN][1000 genomes]
rs4246013	0.80[ASN][1000 genomes]
rs4362986	0.80[ASN][1000 genomes]
rs4415120	0.80[ASN][1000 genomes]
rs4469237	0.80[ASN][1000 genomes]
rs4957652	0.83[ASN][1000 genomes]
rs4957653	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4957654	0.88[ASN][1000 genomes]
rs4957655	0.88[ASN][1000 genomes]
rs4957657	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4958063	0.80[ASN][1000 genomes]
rs4958065	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4958067	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4958069	0.81[ASN][1000 genomes]
rs61099282	0.86[ASN][1000 genomes]
rs62365791	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62365805	0.97[EUR][1000 genomes]
rs62365806	0.91[EUR][1000 genomes]
rs6421845	0.85[ASN][1000 genomes]
rs6594619	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6594625	0.88[ASN][1000 genomes]
rs6594627	0.88[ASN][1000 genomes]
rs6594628	0.88[ASN][1000 genomes]
rs6594629	0.88[ASN][1000 genomes]
rs6594630	0.88[ASN][1000 genomes]
rs6594631	0.88[ASN][1000 genomes]
rs6594632	0.88[ASN][1000 genomes]
rs6594633	0.88[ASN][1000 genomes]
rs6594635	0.88[ASN][1000 genomes]
rs6594640	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6863537	0.88[ASN][1000 genomes]
rs6864143	0.98[ASN][1000 genomes]
rs7448340	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7448452	0.88[ASN][1000 genomes]
rs7448478	0.87[ASN][1000 genomes]
rs7448522	0.88[ASN][1000 genomes]
rs7703825	0.88[ASN][1000 genomes]
rs7710128	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7713574	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7713733	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7717646	0.88[ASN][1000 genomes]
rs7717938	0.88[ASN][1000 genomes]
rs7733473	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7737751	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv819717	chr5:111935623-111947507	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv823180	chr5:111939337-111947460	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv823182	chr5:111939479-111947460	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111941000-111952600	Weak transcription	Right Atrium	heart
2	chr5:111945400-111952400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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