Variant report

Variant	rs7713574
Chromosome Location	chr5:111918420-111918421
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10052730	0.92[ASN][1000 genomes]
rs10052739	0.92[ASN][1000 genomes]
rs10066425	1.00[ASN][1000 genomes]
rs10067709	0.92[ASN][1000 genomes]
rs11742518	0.92[ASN][1000 genomes]
rs11747396	0.92[ASN][1000 genomes]
rs12110086	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12516949	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12518872	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13185746	0.92[ASN][1000 genomes]
rs4073304	0.92[ASN][1000 genomes]
rs4073305	0.92[ASN][1000 genomes]
rs4073306	0.91[ASN][1000 genomes]
rs4246013	0.95[ASN][1000 genomes]
rs4362986	0.95[ASN][1000 genomes]
rs4415120	0.95[ASN][1000 genomes]
rs4469237	0.95[ASN][1000 genomes]
rs4957652	0.97[ASN][1000 genomes]
rs4957653	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4957654	0.92[ASN][1000 genomes]
rs4957655	0.92[ASN][1000 genomes]
rs4957657	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4958063	0.95[ASN][1000 genomes]
rs4958065	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4958067	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4958069	0.95[ASN][1000 genomes]
rs62365791	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62365805	0.96[EUR][1000 genomes]
rs62365806	0.90[EUR][1000 genomes]
rs6421845	0.93[ASN][1000 genomes]
rs6594619	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6594625	0.92[ASN][1000 genomes]
rs6594627	0.92[ASN][1000 genomes]
rs6594628	0.92[ASN][1000 genomes]
rs6594629	0.92[ASN][1000 genomes]
rs6594630	0.92[ASN][1000 genomes]
rs6594631	0.92[ASN][1000 genomes]
rs6594632	0.92[ASN][1000 genomes]
rs6594633	0.92[ASN][1000 genomes]
rs6594635	0.90[ASN][1000 genomes]
rs6594640	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6863537	0.92[ASN][1000 genomes]
rs6864143	0.82[ASN][1000 genomes]
rs7378752	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7448340	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7448452	0.92[ASN][1000 genomes]
rs7448478	0.91[ASN][1000 genomes]
rs7448522	0.92[ASN][1000 genomes]
rs7703825	0.92[ASN][1000 genomes]
rs7710128	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7713733	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7717646	0.92[ASN][1000 genomes]
rs7717938	0.92[ASN][1000 genomes]
rs7733473	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7737751	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv20349	chr5:111915807-111944317	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111915800-111919200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:111916400-111918600	Enhancers	Fetal Heart	heart
3	chr5:111917000-111920200	Weak transcription	HSMMtube	muscle
4	chr5:111918000-111921400	Weak transcription	K562	blood
5	chr5:111918400-111918600	Enhancers	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links