Variant report

Variant	rs6869013
Chromosome Location	chr5:147440889-147440890
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11950029	0.81[AFR][1000 genomes]
rs12110119	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17107676	0.80[AFR][1000 genomes]
rs56849620	0.89[AMR][1000 genomes]
rs56900521	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61474672	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6863596	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6872979	0.94[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6878056	1.00[AMR][1000 genomes]
rs6890477	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6896308	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73794608	1.00[AMR][1000 genomes]
rs73794656	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7706607	0.89[AMR][1000 genomes]
rs7726873	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7733255	0.80[AFR][1000 genomes]
rs953310	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033838	chr5:147360521-147484014	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv933016	chr5:147395849-147453701	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv933225	chr5:147395849-147486560	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147437200-147457400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:147437800-147450200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr5:147437800-147463800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:147440400-147441000	Enhancers	NHEK	skin
5	chr5:147440400-147449600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:147440400-147452800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:147440800-147441000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links