Variant report

Variant	rs73794608
Chromosome Location	chr5:147394773-147394774
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11950029	0.89[AFR][1000 genomes]
rs12110119	1.00[AMR][1000 genomes]
rs17107672	0.92[AFR][1000 genomes]
rs17107673	0.89[AFR][1000 genomes]
rs17107676	0.90[AFR][1000 genomes]
rs56849620	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs56900521	1.00[AMR][1000 genomes]
rs61474672	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6863596	1.00[AMR][1000 genomes]
rs6869013	1.00[AMR][1000 genomes]
rs6872979	1.00[AMR][1000 genomes]
rs6878056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6890477	1.00[AMR][1000 genomes]
rs6896308	1.00[AMR][1000 genomes]
rs73794614	0.88[AFR][1000 genomes]
rs73794656	1.00[AMR][1000 genomes]
rs7706607	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7721002	0.92[AFR][1000 genomes]
rs7726873	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7727019	0.92[AFR][1000 genomes]
rs7733255	0.90[AFR][1000 genomes]
rs953310	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028477	chr5:147255013-147416217	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1033838	chr5:147360521-147484014	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147386400-147400000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr5:147388600-147401800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:147391600-147400800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:147391800-147401600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr5:147392600-147396200	Weak transcription	Psoas Muscle	Psoas
6	chr5:147394400-147398600	Weak transcription	Hela-S3	cervix
7	chr5:147394600-147399000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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