Variant report

Variant	rs7726873
Chromosome Location	chr5:147418783-147418784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11950029	0.95[AFR][1000 genomes]
rs12110119	1.00[AMR][1000 genomes]
rs17107672	0.97[AFR][1000 genomes]
rs17107673	0.94[AFR][1000 genomes]
rs17107676	0.96[AFR][1000 genomes]
rs56849620	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs56900521	1.00[AMR][1000 genomes]
rs61474672	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6863596	1.00[AMR][1000 genomes]
rs6869013	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6872979	1.00[AMR][1000 genomes]
rs6878056	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6890477	1.00[AMR][1000 genomes]
rs6896308	1.00[AMR][1000 genomes]
rs73794608	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73794614	0.94[AFR][1000 genomes]
rs73794656	1.00[AMR][1000 genomes]
rs7706607	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7721002	0.97[AFR][1000 genomes]
rs7727019	0.97[AFR][1000 genomes]
rs7733255	0.96[AFR][1000 genomes]
rs953310	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033838	chr5:147360521-147484014	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv933016	chr5:147395849-147453701	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv933225	chr5:147395849-147486560	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147413600-147434200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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