Variant report

Variant	rs6871873
Chromosome Location	chr5:74148001-74148002
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr5:74147867-74148098	K562	blood:	n/a	chr5:74147947-74147962 chr5:74148052-74148063 chr5:74148053-74148064 chr5:74148053-74148064 chr5:74148052-74148063 chr5:74147952-74147962 chr5:74147952-74147961
2	RCOR1	chr5:74147959-74148006	GM12878	blood:	n/a	n/a
3	FOS	chr5:74147763-74148147	MCF10A-Er-Src	breast:	n/a	chr5:74147883-74147891 chr5:74147954-74147962
4	POLR2A	chr5:74147106-74148186	MCF10A-Er-Src	breast:	n/a	n/a
5	STAT3	chr5:74147823-74148122	MCF10A-Er-Src	breast:	n/a	n/a
6	POLR2A	chr5:74147509-74148044	MCF10A-Er-Src	breast:	n/a	n/a
7	CEBPB	chr5:74147774-74148111	Hela-S3	cervix:	n/a	n/a
8	CEBPB	chr5:74147791-74148105	IMR90	lung:	n/a	n/a
9	YY1	chr5:74147906-74148249	GM12891	blood:	n/a	chr5:74148055-74148077 chr5:74148067-74148077
10	POLR2A	chr5:74147840-74148058	GM12891	blood:	n/a	n/a
11	STAT3	chr5:74147879-74148132	MCF10A-Er-Src	breast:	n/a	n/a
12	CEBPB	chr5:74147805-74148112	A549	lung:	n/a	n/a
13	E2F4	chr5:74147775-74148149	MCF10A-Er-Src	breast:	n/a	n/a
14	MYC	chr5:74147804-74148016	MCF10A-Er-Src	breast:	n/a	n/a
15	STAT3	chr5:74147676-74148029	MCF10A-Er-Src	breast:	n/a	n/a
16	YY1	chr5:74147912-74148095	GM12892	blood:	n/a	chr5:74148055-74148077 chr5:74148067-74148077
17	FOS	chr5:74147780-74148122	MCF10A-Er-Src	breast:	n/a	chr5:74147883-74147891 chr5:74147954-74147962
18	MAFF	chr5:74147796-74148069	HepG2	liver:	n/a	chr5:74147945-74147963
19	BACH1	chr5:74147791-74148119	H1-hESC	embryonic stem cell:	n/a	n/a
20	MAFK	chr5:74147792-74148112	H1-hESC	embryonic stem cell:	n/a	chr5:74147947-74147962 chr5:74148052-74148063 chr5:74148053-74148064 chr5:74148053-74148064 chr5:74148052-74148063 chr5:74147952-74147962 chr5:74147952-74147961
21	POLR2A	chr5:74147820-74148264	GM12891	blood:	n/a	n/a
22	FOS	chr5:74147773-74148139	MCF10A-Er-Src	breast:	n/a	chr5:74147883-74147891 chr5:74147954-74147962
23	CEBPB	chr5:74147798-74148064	HepG2	liver:	n/a	n/a
24	MAFK	chr5:74147789-74148119	HepG2	liver:	n/a	chr5:74147947-74147962 chr5:74148052-74148063 chr5:74148053-74148064 chr5:74148053-74148064 chr5:74148052-74148063 chr5:74147952-74147962 chr5:74147952-74147961
25	MAFF	chr5:74147824-74148079	K562	blood:	n/a	chr5:74147945-74147963
26	CEBPB	chr5:74147694-74148246	A549	lung:	n/a	n/a
27	MAFK	chr5:74147815-74148114	HepG2	liver:	n/a	chr5:74147947-74147962 chr5:74148052-74148063 chr5:74148053-74148064 chr5:74148053-74148064 chr5:74148052-74148063 chr5:74147952-74147962 chr5:74147952-74147961
28	BACH1	chr5:74147915-74148020	K562	blood:	n/a	n/a
29	MYC	chr5:74147804-74148092	MCF10A-Er-Src	breast:	n/a	n/a
30	FOS	chr5:74147771-74148147	MCF10A-Er-Src	breast:	n/a	chr5:74147883-74147891 chr5:74147954-74147962

Variant related genes	Relation type
FAM169A	TF binding region

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11950373	1.00[AMR][1000 genomes]
rs11950502	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11951326	1.00[AMR][1000 genomes]
rs11952038	1.00[AMR][1000 genomes]
rs11952887	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11954065	1.00[AMR][1000 genomes]
rs11955669	1.00[AMR][1000 genomes]
rs11956317	1.00[AMR][1000 genomes]
rs11957259	1.00[AMR][1000 genomes]
rs11960152	1.00[AMR][1000 genomes]
rs11960413	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1447452	1.00[AMR][1000 genomes]
rs16872289	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16872292	1.00[AMR][1000 genomes]
rs16872305	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16872321	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1813646	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35565659	1.00[AMR][1000 genomes]
rs4383717	0.88[AFR][1000 genomes]
rs55828592	1.00[AMR][1000 genomes]
rs55941676	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57371810	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60089359	1.00[AMR][1000 genomes]
rs60746244	1.00[AMR][1000 genomes]
rs61373898	1.00[AMR][1000 genomes]
rs61589039	1.00[AMR][1000 genomes]
rs6870452	1.00[AMR][1000 genomes]
rs6870609	1.00[AMR][1000 genomes]
rs6885078	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73762944	1.00[AMR][1000 genomes]
rs73762946	1.00[AMR][1000 genomes]
rs73762947	1.00[AMR][1000 genomes]
rs73762955	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73762957	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73762958	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74069000-74153000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:74140200-74157800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:74140600-74160000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:74142800-74151000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:74143600-74149200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr5:74144400-74149400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr5:74144600-74148800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr5:74145600-74149200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:74146000-74148400	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr5:74146000-74151200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:74146200-74148600	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr5:74146200-74148800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr5:74146400-74148600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr5:74146400-74149400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr5:74146600-74148600	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr5:74146600-74149400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr5:74146800-74148400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr5:74146800-74148600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr5:74146800-74148800	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr5:74147000-74148200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr5:74147000-74148600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr5:74147000-74149200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr5:74147200-74150000	Enhancers	HepG2	liver
24	chr5:74147200-74151000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr5:74147400-74148800	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr5:74147400-74151200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr5:74147400-74161000	Weak transcription	Primary T cells from cord blood	blood
28	chr5:74147600-74148200	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr5:74147600-74148200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr5:74147600-74148200	Flanking Active TSS	NH-A	brain
31	chr5:74147600-74148400	Active TSS	Adipose Nuclei	Adipose
32	chr5:74147600-74148600	Enhancers	NHLF	lung
33	chr5:74147600-74149400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr5:74147800-74148200	Active TSS	Primary hematopoietic stem cells	blood
35	chr5:74147800-74148200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
36	chr5:74147800-74148200	Active TSS	Brain Anterior Caudate	brain
37	chr5:74147800-74148200	Flanking Active TSS	Brain Substantia Nigra	brain
38	chr5:74147800-74148200	Flanking Active TSS	GM12878-XiMat	blood
39	chr5:74147800-74148400	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr5:74147800-74148400	Flanking Active TSS	A549	lung
41	chr5:74147800-74148600	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr5:74147800-74148600	Enhancers	Fetal Thymus	thymus
43	chr5:74147800-74149000	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr5:74147800-74149400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr5:74148000-74148200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr5:74148000-74148200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr5:74148000-74148200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr5:74148000-74148200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr5:74148000-74148200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr5:74148000-74148200	Enhancers	Aorta	Aorta

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