Variant report

Variant	rs6873226
Chromosome Location	chr5:97835266-97835267
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10515272	0.82[ASN][1000 genomes]
rs17165991	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28695208	0.82[ASN][1000 genomes]
rs6898483	0.82[ASN][1000 genomes]
rs73145747	0.82[ASN][1000 genomes]
rs73145755	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145757	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73145763	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs745391	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7722457	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv882412	chr5:97796120-97953719	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97828400-97837600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr5:97832200-97838000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:97833200-97836000	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr5:97833600-97835800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:97833600-97837600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:97833800-97836600	Enhancers	Duodenum Mucosa	Duodenum
7	chr5:97833800-97839000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr5:97834000-97835400	Weak transcription	Fetal Intestine Small	intestine
9	chr5:97834200-97835800	Enhancers	Dnd41	blood
10	chr5:97834200-97839000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr5:97834400-97835600	Enhancers	Primary T cells from cord blood	blood
12	chr5:97834400-97837600	Weak transcription	HSMM	muscle
13	chr5:97834400-97837800	Weak transcription	NHDF-Ad	bronchial
14	chr5:97834400-97839400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr5:97834800-97835800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:97835200-97835800	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
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