Variant report

Variant	rs745391
Chromosome Location	chr5:97836874-97836875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10515272	0.82[ASN][1000 genomes]
rs17165991	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28695208	0.82[ASN][1000 genomes]
rs6596727	1.00[JPT][hapmap]
rs6863762	1.00[JPT][hapmap]
rs6873226	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6898483	0.82[ASN][1000 genomes]
rs73145747	0.82[ASN][1000 genomes]
rs73145755	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73145757	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73145763	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7722457	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv882412	chr5:97796120-97953719	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97828400-97837600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr5:97832200-97838000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:97833600-97837600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:97833800-97839000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr5:97834200-97839000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:97834400-97837600	Weak transcription	HSMM	muscle
7	chr5:97834400-97837800	Weak transcription	NHDF-Ad	bronchial
8	chr5:97834400-97839400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr5:97835800-97837000	Weak transcription	Fetal Intestine Large	intestine
10	chr5:97835800-97837200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr5:97835800-97837800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:97835800-97839000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:97835800-97839400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:97836000-97837000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr5:97836000-97839200	Weak transcription	Fetal Intestine Small	intestine
16	chr5:97836600-97839600	Weak transcription	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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