Variant report

Variant	rs73145747
Chromosome Location	chr5:97810992-97810993
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10065024	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10065465	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10515272	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12514828	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12516322	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12523068	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17165952	0.92[EUR][1000 genomes]
rs17165953	0.92[EUR][1000 genomes]
rs17165991	0.82[ASN][1000 genomes]
rs1813143	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2085230	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28695208	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60235983	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6873226	0.82[ASN][1000 genomes]
rs6873376	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6898483	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73143877	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73143896	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73145719	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73145755	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73145757	0.83[EUR][1000 genomes]
rs73145763	0.82[ASN][1000 genomes]
rs745391	0.82[ASN][1000 genomes]
rs7722457	0.82[ASN][1000 genomes]
rs7722559	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830419	chr5:97653713-97829079	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv882409	chr5:97761687-97817930	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
5	nsv882411	chr5:97764867-97817930	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	n/a	n/a	inside rSNPs	diseases
6	nsv882412	chr5:97796120-97953719	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97804600-97811800	Weak transcription	Osteobl	bone
2	chr5:97804600-97812000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:97808600-97811200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:97808800-97811000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:97808800-97811000	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr5:97809600-97811000	Enhancers	Duodenum Mucosa	Duodenum
7	chr5:97809600-97811000	Enhancers	Fetal Intestine Small	intestine
8	chr5:97809800-97811000	Enhancers	Fetal Intestine Large	intestine
9	chr5:97809800-97811200	Enhancers	NHLF	lung
10	chr5:97810000-97811200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:97810000-97813600	Enhancers	NHDF-Ad	bronchial
12	chr5:97810400-97811000	Enhancers	HSMM	muscle
13	chr5:97810600-97811000	Enhancers	Fetal Muscle Leg	muscle
14	chr5:97810600-97811000	Enhancers	Fetal Stomach	stomach
15	chr5:97810800-97811400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr5:97810800-97812000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr5:97810800-97818000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr5:97810800-97818200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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