Variant report

Variant	rs6879193
Chromosome Location	chr5:15913183-15913184
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6878943	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6883363	0.83[CEU][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880755	chr5:15670377-15938553	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1031483	chr5:15738485-15926083	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv461986	chr5:15854098-15943683	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv597292	chr5:15854098-15943683	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv830216	chr5:15860662-16060420	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv427712	chr5:15883439-16055856	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15900200-15915400	Weak transcription	Small Intestine	intestine
2	chr5:15912600-15913200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:15912600-15914000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:15912800-15913200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr5:15912800-15913200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr5:15912800-15913400	Enhancers	Fetal Lung	lung
7	chr5:15912800-15913800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr5:15913000-15913200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr5:15913000-15913200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr5:15913000-15913400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr5:15913000-15914000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr5:15913000-15914000	Enhancers	Fetal Heart	heart
13	chr5:15913000-15915600	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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