Variant report

Variant	rs6883363
Chromosome Location	chr5:15913562-15913563
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12173257	0.93[ASN][1000 genomes]
rs12653771	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs13185525	0.85[CHB][hapmap]
rs17648198	0.82[JPT][hapmap]
rs6878943	0.83[CEU][hapmap];1.00[GIH][hapmap];0.90[EUR][1000 genomes]
rs6879193	0.83[CEU][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6897647	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880755	chr5:15670377-15938553	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1031483	chr5:15738485-15926083	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv461986	chr5:15854098-15943683	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv597292	chr5:15854098-15943683	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv830216	chr5:15860662-16060420	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv427712	chr5:15883439-16055856	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6883363	MYO10	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15900200-15915400	Weak transcription	Small Intestine	intestine
2	chr5:15912600-15914000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr5:15912800-15913800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr5:15913000-15914000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr5:15913000-15914000	Enhancers	Fetal Heart	heart
6	chr5:15913000-15915600	Enhancers	Fetal Stomach	stomach
7	chr5:15913200-15913800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr5:15913200-15918400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:15913200-15918600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr5:15913400-15913600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr5:15913400-15913600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:15913400-15913800	Flanking Active TSS	Fetal Lung	lung
13	chr5:15913400-15914000	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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