Variant report

Variant	rs6897647
Chromosome Location	chr5:15904024-15904025
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10077089	0.90[EUR][1000 genomes]
rs12653771	0.85[CHB][hapmap]
rs13185525	1.00[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs183759	0.81[CEU][hapmap];0.90[MEX][hapmap]
rs185405	0.87[EUR][1000 genomes]
rs4702114	0.89[EUR][1000 genomes]
rs6883363	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880755	chr5:15670377-15938553	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1031483	chr5:15738485-15926083	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv461986	chr5:15854098-15943683	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv597292	chr5:15854098-15943683	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv830216	chr5:15860662-16060420	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv427712	chr5:15883439-16055856	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15899800-15906200	Enhancers	Fetal Lung	lung
2	chr5:15900200-15915400	Weak transcription	Small Intestine	intestine
3	chr5:15900600-15906000	Enhancers	Brain Substantia Nigra	brain
4	chr5:15902200-15905400	Enhancers	Brain Angular Gyrus	brain
5	chr5:15902600-15904400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:15903200-15904200	Weak transcription	Brain Hippocampus Middle	brain
7	chr5:15903200-15904400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr5:15903200-15904400	Weak transcription	Fetal Heart	heart
9	chr5:15903200-15904600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr5:15903200-15905000	Weak transcription	Adipose Nuclei	Adipose
11	chr5:15903400-15904400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr5:15903400-15904800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr5:15903400-15905000	Weak transcription	Ovary	ovary
14	chr5:15903600-15904400	Weak transcription	Fetal Stomach	stomach
15	chr5:15904000-15904600	Enhancers	Colon Smooth Muscle	Colon
16	chr5:15904000-15904600	Enhancers	Rectal Smooth Muscle	rectum
17	chr5:15904000-15904800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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