Variant report

Variant	rs6882368
Chromosome Location	chr5:41255218-41255219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs28603337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55730142	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56176580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57480514	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61115205	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6861061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750104	0.94[AFR][1000 genomes]
rs73753120	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753123	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753125	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753127	1.00[AMR][1000 genomes]
rs73753129	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753134	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7706509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7728289	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7728387	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427717	chr5:41201377-41369202	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830269	chr5:41209113-41393536	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41253600-41256800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:41255000-41262400	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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