Variant report

Variant	rs73750104
Chromosome Location	chr5:41253600-41253601
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs28603337	0.94[AFR][1000 genomes]
rs55730142	0.85[AFR][1000 genomes]
rs56176580	0.94[AFR][1000 genomes]
rs57480514	0.83[AFR][1000 genomes]
rs61115205	0.87[AFR][1000 genomes]
rs6861061	0.94[AFR][1000 genomes]
rs6882368	0.94[AFR][1000 genomes]
rs73753120	0.87[AFR][1000 genomes]
rs73753123	0.87[AFR][1000 genomes]
rs73753125	0.87[AFR][1000 genomes]
rs73753129	0.85[AFR][1000 genomes]
rs73753134	0.85[AFR][1000 genomes]
rs7706509	0.94[AFR][1000 genomes]
rs7728289	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427717	chr5:41201377-41369202	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830269	chr5:41209113-41393536	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv597879	chr5:41229277-41253853	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41253400-41253600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:41253400-41253600	Enhancers	Aorta	Aorta
3	chr5:41253600-41256800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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