Variant report

Variant	rs73753129
Chromosome Location	chr5:41198238-41198239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs28603337	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55730142	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56176580	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57480514	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57772524	0.82[AFR][1000 genomes]
rs59070453	0.82[AFR][1000 genomes]
rs61050629	0.82[AFR][1000 genomes]
rs61115205	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6861061	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6882368	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750104	0.85[AFR][1000 genomes]
rs73750298	0.82[AFR][1000 genomes]
rs73753115	0.82[AFR][1000 genomes]
rs73753120	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753123	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753125	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753127	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753134	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7706509	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7728289	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7728387	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv965601	chr5:41198137-41204629	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41185200-41203200	Weak transcription	Fetal Intestine Small	intestine
2	chr5:41194600-41201800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr5:41195600-41199000	Weak transcription	Left Ventricle	heart
4	chr5:41195600-41205400	Weak transcription	Pancreas	Pancrea
5	chr5:41195800-41201400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:41196000-41200400	Genic enhancers	Liver	Liver
7	chr5:41196000-41201200	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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