Variant report

Variant	rs73753115
Chromosome Location	chr5:41183258-41183259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1035498	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16870881	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16870939	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16870948	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55721014	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55752804	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56364240	1.00[AMR][1000 genomes]
rs57323128	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57772524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57893040	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57907280	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59070453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59800950	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59803945	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60746065	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60996401	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61050629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61111492	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61622113	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6451561	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6451563	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6872142	1.00[AMR][1000 genomes]
rs6880534	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6886587	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6896011	1.00[AMR][1000 genomes]
rs6896183	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750229	1.00[AMR][1000 genomes]
rs73750256	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750291	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750292	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750295	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750296	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750297	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750299	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750300	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750301	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750302	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753104	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753105	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753106	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753109	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753111	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753113	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753120	0.83[AFR][1000 genomes]
rs73753123	0.83[AFR][1000 genomes]
rs73753125	0.83[AFR][1000 genomes]
rs73753129	0.82[AFR][1000 genomes]
rs7718212	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41173400-41184000	Weak transcription	Pancreas	Pancrea
2	chr5:41178000-41183800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:41181400-41185200	Enhancers	Fetal Intestine Small	intestine
4	chr5:41181600-41184200	Enhancers	Adipose Nuclei	Adipose
5	chr5:41181600-41185200	Enhancers	Fetal Intestine Large	intestine
6	chr5:41181800-41183400	Enhancers	Duodenum Mucosa	Duodenum
7	chr5:41181800-41184200	Enhancers	HepG2	liver
8	chr5:41181800-41186400	Enhancers	Stomach Mucosa	stomach
9	chr5:41182000-41185000	Genic enhancers	Liver	Liver
10	chr5:41182000-41185600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:41182400-41183400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:41182600-41183400	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr5:41182600-41184000	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr5:41182600-41184000	Weak transcription	Small Intestine	intestine
15	chr5:41182800-41184000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:41183000-41183400	Weak transcription	Fetal Kidney	kidney
17	chr5:41183200-41183600	Weak transcription	Ovary	ovary

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