Variant report

Variant	rs16870939
Chromosome Location	chr5:41178027-41178028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1035498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16870766	1.00[YRI][hapmap]
rs16870767	1.00[YRI][hapmap]
rs16870881	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16870948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55721014	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55752804	1.00[AMR][1000 genomes]
rs56364240	1.00[AMR][1000 genomes]
rs57323128	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57772524	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57893040	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57907280	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59070453	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59800950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59803945	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60746065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60996401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61050629	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61111492	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61622113	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6451561	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6451563	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6870367	1.00[YRI][hapmap]
rs6872142	0.82[ASW][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs6880534	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6886587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6896011	1.00[AMR][1000 genomes]
rs6896183	1.00[AMR][1000 genomes]
rs73750229	1.00[AMR][1000 genomes]
rs73750256	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750291	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750292	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750296	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750298	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750300	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750301	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753105	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753115	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753120	0.81[AFR][1000 genomes]
rs73753123	0.81[AFR][1000 genomes]
rs73753125	0.81[AFR][1000 genomes]
rs7718212	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41139800-41182000	Weak transcription	Left Ventricle	heart
2	chr5:41151000-41181400	Weak transcription	Fetal Intestine Small	intestine
3	chr5:41159000-41181800	Weak transcription	Right Ventricle	heart
4	chr5:41169600-41181800	Weak transcription	Ovary	ovary
5	chr5:41171800-41181600	Weak transcription	Fetal Intestine Large	intestine
6	chr5:41173400-41184000	Weak transcription	Pancreas	Pancrea
7	chr5:41175000-41178400	Genic enhancers	Liver	Liver
8	chr5:41177200-41178200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:41178000-41181400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr5:41178000-41183800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links