Variant report

Variant	rs57907280
Chromosome Location	chr5:41169402-41169403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1035498	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16870881	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16870939	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16870948	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2287901	0.94[ASN][1000 genomes]
rs3805714	0.94[ASN][1000 genomes]
rs55721014	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55752804	1.00[AMR][1000 genomes]
rs56080361	0.89[ASN][1000 genomes]
rs56364240	1.00[AMR][1000 genomes]
rs57323128	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57772524	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57893040	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59070453	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59800950	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59803945	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60746065	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60996401	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61050629	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61111492	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61622113	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6451561	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6451563	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6872142	1.00[AMR][1000 genomes]
rs6880534	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6886587	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6896011	1.00[AMR][1000 genomes]
rs6896183	1.00[AMR][1000 genomes]
rs73750229	1.00[AMR][1000 genomes]
rs73750256	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750291	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750292	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750295	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750296	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750297	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750298	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750299	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750300	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73750301	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73750302	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753104	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753105	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753106	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753109	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753111	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753113	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753115	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7718212	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41139800-41182000	Weak transcription	Left Ventricle	heart
2	chr5:41151000-41181400	Weak transcription	Fetal Intestine Small	intestine
3	chr5:41159000-41181800	Weak transcription	Right Ventricle	heart
4	chr5:41160200-41172600	Strong transcription	Liver	Liver
5	chr5:41168200-41175200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:41168800-41172000	Weak transcription	Fetal Heart	heart
7	chr5:41169000-41169600	Strong transcription	Pancreas	Pancrea
8	chr5:41169000-41169800	Strong transcription	Fetal Intestine Large	intestine

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