Variant report

Variant	rs6872142
Chromosome Location	chr5:41012146-41012147
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1035498	1.00[AMR][1000 genomes]
rs16870766	0.82[YRI][hapmap]
rs16870767	0.82[YRI][hapmap]
rs16870881	1.00[AMR][1000 genomes]
rs16870939	1.00[AMR][1000 genomes]
rs16870948	1.00[AMR][1000 genomes]
rs55721014	1.00[AMR][1000 genomes]
rs55752804	1.00[AMR][1000 genomes]
rs56364240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57323128	1.00[AMR][1000 genomes]
rs57772524	1.00[AMR][1000 genomes]
rs57893040	1.00[AMR][1000 genomes]
rs57907280	1.00[AMR][1000 genomes]
rs59070453	1.00[AMR][1000 genomes]
rs59800950	1.00[AMR][1000 genomes]
rs59803945	1.00[AMR][1000 genomes]
rs60746065	1.00[AMR][1000 genomes]
rs60996401	1.00[AMR][1000 genomes]
rs61050629	1.00[AMR][1000 genomes]
rs61111492	1.00[AMR][1000 genomes]
rs61622113	1.00[AMR][1000 genomes]
rs6451561	1.00[AMR][1000 genomes]
rs6451563	1.00[AMR][1000 genomes]
rs6870367	0.82[YRI][hapmap]
rs6880534	1.00[AMR][1000 genomes]
rs6886587	1.00[AMR][1000 genomes]
rs6896011	1.00[AMR][1000 genomes]
rs6896183	1.00[AMR][1000 genomes]
rs73750229	1.00[AMR][1000 genomes]
rs73750256	1.00[AMR][1000 genomes]
rs73750291	1.00[AMR][1000 genomes]
rs73750292	1.00[AMR][1000 genomes]
rs73750295	1.00[AMR][1000 genomes]
rs73750296	1.00[AMR][1000 genomes]
rs73750297	1.00[AMR][1000 genomes]
rs73750298	1.00[AMR][1000 genomes]
rs73750299	1.00[AMR][1000 genomes]
rs73750300	1.00[AMR][1000 genomes]
rs73750301	1.00[AMR][1000 genomes]
rs73750302	1.00[AMR][1000 genomes]
rs73753104	1.00[AMR][1000 genomes]
rs73753105	1.00[AMR][1000 genomes]
rs73753106	1.00[AMR][1000 genomes]
rs73753109	1.00[AMR][1000 genomes]
rs73753111	1.00[AMR][1000 genomes]
rs73753113	1.00[AMR][1000 genomes]
rs73753115	1.00[AMR][1000 genomes]
rs7718212	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv880339	chr5:40986084-41034181	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41010400-41012400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr5:41011000-41012200	Weak transcription	Liver	Liver

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