Variant report

Variant	rs56364240
Chromosome Location	chr5:41008631-41008632
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:40832331..40835954-chr5:41008013..41011507,3	MCF-7	breast:
2	chr5:40999893..41001799-chr5:41007806..41010724,2	MCF-7	breast:
3	chr5:40989247..40991997-chr5:41008432..41010660,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145592	Chromatin interaction
ENSG00000171495	Chromatin interaction
ENSG00000212296	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1035498	1.00[AMR][1000 genomes]
rs16870881	1.00[AMR][1000 genomes]
rs16870939	1.00[AMR][1000 genomes]
rs16870948	1.00[AMR][1000 genomes]
rs55721014	1.00[AMR][1000 genomes]
rs55752804	1.00[AMR][1000 genomes]
rs57323128	1.00[AMR][1000 genomes]
rs57772524	1.00[AMR][1000 genomes]
rs57893040	1.00[AMR][1000 genomes]
rs57907280	1.00[AMR][1000 genomes]
rs59070453	1.00[AMR][1000 genomes]
rs59800950	1.00[AMR][1000 genomes]
rs59803945	1.00[AMR][1000 genomes]
rs60746065	1.00[AMR][1000 genomes]
rs60996401	1.00[AMR][1000 genomes]
rs61050629	1.00[AMR][1000 genomes]
rs61111492	1.00[AMR][1000 genomes]
rs61622113	1.00[AMR][1000 genomes]
rs6451561	1.00[AMR][1000 genomes]
rs6451563	1.00[AMR][1000 genomes]
rs6872142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6880534	1.00[AMR][1000 genomes]
rs6886587	1.00[AMR][1000 genomes]
rs6896011	1.00[AMR][1000 genomes]
rs6896183	1.00[AMR][1000 genomes]
rs73750229	1.00[AMR][1000 genomes]
rs73750256	1.00[AMR][1000 genomes]
rs73750291	1.00[AMR][1000 genomes]
rs73750292	1.00[AMR][1000 genomes]
rs73750295	1.00[AMR][1000 genomes]
rs73750296	1.00[AMR][1000 genomes]
rs73750297	1.00[AMR][1000 genomes]
rs73750298	1.00[AMR][1000 genomes]
rs73750299	1.00[AMR][1000 genomes]
rs73750300	1.00[AMR][1000 genomes]
rs73750301	1.00[AMR][1000 genomes]
rs73750302	1.00[AMR][1000 genomes]
rs73753104	1.00[AMR][1000 genomes]
rs73753105	1.00[AMR][1000 genomes]
rs73753106	1.00[AMR][1000 genomes]
rs73753109	1.00[AMR][1000 genomes]
rs73753111	1.00[AMR][1000 genomes]
rs73753113	1.00[AMR][1000 genomes]
rs73753115	1.00[AMR][1000 genomes]
rs7718212	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881467	chr5:40869802-41008650	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2757114	chr5:40874078-41009282	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759341	chr5:40874078-41009282	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv880339	chr5:40986084-41034181	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41005600-41010400	Weak transcription	Liver	Liver
2	chr5:41008600-41009600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:41008600-41009600	Enhancers	Right Atrium	heart
4	chr5:41008600-41010000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:41008600-41010400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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