Variant report

Variant	rs6880534
Chromosome Location	chr5:41110219-41110220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1035498	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16870766	1.00[YRI][hapmap]
rs16870767	1.00[YRI][hapmap]
rs16870881	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16870939	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16870948	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55721014	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55752804	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56364240	1.00[AMR][1000 genomes]
rs57323128	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57772524	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57893040	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57907280	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59070453	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59800950	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59803945	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60746065	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60996401	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61050629	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61111492	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61622113	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6451561	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6451563	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6870367	0.82[YRI][hapmap]
rs6872142	1.00[AMR][1000 genomes]
rs6886587	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6896011	1.00[AMR][1000 genomes]
rs6896183	1.00[AMR][1000 genomes]
rs73750229	1.00[AMR][1000 genomes]
rs73750256	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750291	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750292	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750295	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750296	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750297	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750298	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750299	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750300	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750301	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750302	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753104	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753105	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753106	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753109	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753111	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753113	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753115	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7718212	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41104800-41111600	Weak transcription	Ovary	ovary
2	chr5:41109800-41111600	Weak transcription	NHDF-Ad	bronchial
3	chr5:41110200-41114800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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