Variant report

Variant	rs6895769
Chromosome Location	chr5:59664098-59664099
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs57558762	1.00[AMR][1000 genomes]
rs59813460	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60452961	1.00[AMR][1000 genomes]
rs61245506	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73104768	1.00[AMR][1000 genomes]
rs73106733	1.00[AMR][1000 genomes]
rs73106783	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73108632	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73108651	1.00[AMR][1000 genomes]
rs73108656	1.00[AMR][1000 genomes]
rs7706015	1.00[ASW][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59647200-59694200	Weak transcription	Primary B cells from cord blood	blood
2	chr5:59649400-59668200	Weak transcription	Gastric	stomach
3	chr5:59650400-59674800	Weak transcription	Aorta	Aorta
4	chr5:59658200-59665600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:59660000-59666800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:59661400-59668000	Weak transcription	HepG2	liver
7	chr5:59662600-59665200	Weak transcription	Pancreas	Pancrea
8	chr5:59662600-59680200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr5:59663600-59664600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:59663600-59664600	Enhancers	Placenta	Placenta
11	chr5:59663600-59664800	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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