Variant report

Variant	rs73104768
Chromosome Location	chr5:59583187-59583188
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs57558762	1.00[AMR][1000 genomes]
rs59813460	1.00[AMR][1000 genomes]
rs60452961	1.00[AMR][1000 genomes]
rs61245506	1.00[AMR][1000 genomes]
rs6895769	1.00[AMR][1000 genomes]
rs73106733	1.00[AMR][1000 genomes]
rs73106783	1.00[AMR][1000 genomes]
rs73108632	1.00[AMR][1000 genomes]
rs73108651	1.00[AMR][1000 genomes]
rs73108656	1.00[AMR][1000 genomes]
rs7706015	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59559600-59584800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:59581000-59583400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:59581400-59583400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr5:59581400-59583400	Enhancers	Primary hematopoietic stem cells	blood
5	chr5:59581800-59583400	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr5:59582200-59583200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:59582200-59591400	Weak transcription	Aorta	Aorta
8	chr5:59582400-59583400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr5:59582600-59585000	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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