Variant report

Variant	rs6896496
Chromosome Location	chr5:74526682-74526683
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:74526525..74528959-chr5:74530851..74533698,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145700	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10058171	0.91[ASN][1000 genomes]
rs10942731	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12173218	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1477931	0.86[ASN][1000 genomes]
rs17671266	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17738746	0.88[ASN][1000 genomes]
rs1833722	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4298240	0.82[ASN][1000 genomes]
rs4703656	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4704193	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4704195	0.84[ASN][1000 genomes]
rs4704198	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56371963	0.83[ASN][1000 genomes]
rs59628276	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6870235	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6890143	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6890320	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6893216	0.88[ASN][1000 genomes]
rs73763033	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73763040	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7448834	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7715608	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016610	chr5:74403611-74627654	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2758000	chr5:74433760-74611714	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2759350	chr5:74433760-74611714	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv882190	chr5:74463185-74554826	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv882191	chr5:74478078-74554826	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74500600-74531400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:74520400-74532200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:74521400-74531200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:74522200-74531400	Weak transcription	Thymus	Thymus
5	chr5:74523800-74532000	Weak transcription	Pancreas	Pancrea
6	chr5:74524600-74532200	Weak transcription	Right Atrium	heart
7	chr5:74526000-74532200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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