Variant report

Variant	rs1833722
Chromosome Location	chr5:74458915-74458916
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10058171	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10942731	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12173218	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1477931	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16872436	0.82[EUR][1000 genomes]
rs17671266	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17738746	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4298240	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4703656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4703658	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4704170	0.82[EUR][1000 genomes]
rs4704193	0.88[ASN][1000 genomes]
rs4704195	0.84[ASN][1000 genomes]
rs4704198	0.89[ASN][1000 genomes]
rs56371963	0.83[ASN][1000 genomes]
rs59628276	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60445650	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61688563	0.83[EUR][1000 genomes]
rs6870235	0.88[ASN][1000 genomes]
rs6890143	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6890320	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6893216	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6896496	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73763033	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73763040	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73765675	0.85[EUR][1000 genomes]
rs7448834	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7715608	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv882189	chr5:74356857-74478078	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1016610	chr5:74403611-74627654	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2758000	chr5:74433760-74611714	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759350	chr5:74433760-74611714	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74458200-74463400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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