Variant report

Variant	rs17671266
Chromosome Location	chr5:74446552-74446553
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10058171	0.91[ASN][1000 genomes]
rs10942731	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12173218	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1477931	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16872436	0.83[EUR][1000 genomes]
rs17671496	1.00[CEU][hapmap]
rs17738746	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1833722	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4298240	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4703656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4703658	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4704170	0.83[EUR][1000 genomes]
rs4704193	0.88[ASN][1000 genomes]
rs4704195	0.84[ASN][1000 genomes]
rs4704198	0.89[ASN][1000 genomes]
rs56371963	0.83[ASN][1000 genomes]
rs59628276	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60445650	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61688563	0.84[EUR][1000 genomes]
rs6870235	0.88[ASN][1000 genomes]
rs6890143	1.00[CEU][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6890320	1.00[CEU][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6893216	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6896496	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73763033	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73763040	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73765675	0.87[EUR][1000 genomes]
rs7448834	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7715608	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv882189	chr5:74356857-74478078	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1016610	chr5:74403611-74627654	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2758000	chr5:74433760-74611714	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759350	chr5:74433760-74611714	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74439600-74449000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:74440400-74448000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:74443600-74447600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:74444600-74450200	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr5:74444600-74454800	Weak transcription	Primary T cells from cord blood	blood
6	chr5:74446400-74446600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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