Variant report

Variant	rs73765675
Chromosome Location	chr5:74374372-74374373
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10058171	0.85[ASN][1000 genomes]
rs10440682	0.86[ASN][1000 genomes]
rs10942731	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1477931	0.80[EUR][1000 genomes]
rs17671266	0.87[EUR][1000 genomes]
rs1833722	0.85[EUR][1000 genomes]
rs3923323	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4298240	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4632781	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4703645	0.97[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4703656	0.87[EUR][1000 genomes]
rs4704170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61688563	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6893216	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv882189	chr5:74356857-74478078	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74368800-74377400	Weak transcription	Hela-S3	cervix
2	chr5:74370800-74377200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
3	chr5:74371000-74375200	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr5:74371400-74374800	Enhancers	Fetal Thymus	thymus
5	chr5:74371400-74375000	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr5:74372400-74375200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr5:74372600-74377000	Weak transcription	Stomach Mucosa	stomach
8	chr5:74372800-74374800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr5:74373000-74374800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr5:74373000-74374800	Enhancers	Thymus	Thymus
11	chr5:74373200-74374800	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr5:74373800-74374800	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr5:74374000-74375000	Enhancers	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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