Variant report

Variant	rs4632781
Chromosome Location	chr5:74376658-74376659
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10058171	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10440682	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10942731	0.82[ASN][1000 genomes]
rs17671266	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs2035191	0.88[EUR][1000 genomes]
rs3923323	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4298240	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4703645	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4703656	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs4704170	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs55810502	0.81[EUR][1000 genomes]
rs61688563	0.94[ASN][1000 genomes]
rs73765675	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv882189	chr5:74356857-74478078	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74368800-74377400	Weak transcription	Hela-S3	cervix
2	chr5:74370800-74377200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
3	chr5:74372600-74377000	Weak transcription	Stomach Mucosa	stomach
4	chr5:74374800-74376800	Weak transcription	Fetal Thymus	thymus
5	chr5:74374800-74376800	Weak transcription	Thymus	Thymus
6	chr5:74375000-74377200	Weak transcription	Primary T cells from cord blood	blood
7	chr5:74375200-74376800	Weak transcription	Primary T helper cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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