Variant report

Variant	rs3923323
Chromosome Location	chr5:74372141-74372142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10058171	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10440682	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10942731	0.85[ASN][1000 genomes]
rs17671266	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17671496	0.92[CHD][hapmap]
rs2035191	0.88[EUR][1000 genomes]
rs4298240	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4632781	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4703645	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4703656	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap]
rs4703658	0.82[TSI][hapmap]
rs4704170	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55810502	0.81[EUR][1000 genomes]
rs61688563	0.96[ASN][1000 genomes]
rs6890143	0.84[JPT][hapmap]
rs73765675	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv882189	chr5:74356857-74478078	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3923323	HMGCR	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74363600-74373000	Weak transcription	Thymus	Thymus
2	chr5:74368800-74377400	Weak transcription	Hela-S3	cervix
3	chr5:74370400-74372200	Weak transcription	Stomach Mucosa	stomach
4	chr5:74370400-74372400	Enhancers	Primary T cells from cord blood	blood
5	chr5:74370800-74377200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr5:74371000-74372200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr5:74371000-74375200	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr5:74371400-74374800	Enhancers	Fetal Thymus	thymus
9	chr5:74371400-74375000	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr5:74371600-74372600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:74371600-74373200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr5:74371800-74373000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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