Variant report

Variant	rs6897850
Chromosome Location	chr5:74022666-74022667
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:74022455-74023497	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:74015011..74017827-chr5:74019863..74023018,4	K562	blood:
2	chr5:74022416..74025189-chr5:74034895..74036734,2	K562	blood:

Variant related genes	Relation type
RNU6-658P	TF binding region
ENSG00000049860	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10515189	0.80[AFR][1000 genomes]
rs10515190	0.89[YRI][hapmap];0.91[AFR][1000 genomes]
rs11746069	0.82[AFR][1000 genomes]
rs11746611	0.87[AFR][1000 genomes]
rs11746717	0.82[AFR][1000 genomes]
rs16872340	0.88[YRI][hapmap]
rs17670605	0.82[AFR][1000 genomes]
rs1979014	0.89[YRI][hapmap]
rs62366376	0.87[AFR][1000 genomes]
rs6453081	0.88[YRI][hapmap]
rs7727197	0.82[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598653	chr5:73992881-74095542	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:73982000-74061800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:73983000-74027000	Weak transcription	Fetal Heart	heart
3	chr5:73983200-74030200	Weak transcription	Small Intestine	intestine
4	chr5:73999800-74060800	Weak transcription	Pancreas	Pancrea
5	chr5:73999800-74062200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:74002600-74030800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:74002600-74031800	Weak transcription	Esophagus	oesophagus
8	chr5:74002600-74041200	Weak transcription	Colonic Mucosa	Colon
9	chr5:74002600-74051600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr5:74002600-74061800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr5:74008400-74028800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:74008400-74036200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:74008400-74047800	Strong transcription	Placenta	Placenta
14	chr5:74008400-74060200	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr5:74008400-74060200	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr5:74008600-74044200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:74008800-74035200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr5:74008800-74036000	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr5:74010000-74036200	Strong transcription	Liver	Liver
20	chr5:74010200-74036000	Strong transcription	Duodenum Mucosa	Duodenum
21	chr5:74010200-74038200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr5:74010200-74048000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr5:74010400-74036400	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr5:74010400-74059600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr5:74011200-74044200	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr5:74011400-74036800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr5:74012000-74051600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr5:74012200-74050400	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr5:74012600-74023000	Strong transcription	Primary T cells from cord blood	blood
30	chr5:74012600-74023200	Strong transcription	Sigmoid Colon	Sigmoid Colon
31	chr5:74012600-74027400	Strong transcription	Left Ventricle	heart
32	chr5:74012600-74027600	Strong transcription	Dnd41	blood
33	chr5:74012600-74034800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr5:74012800-74036200	Strong transcription	Fetal Intestine Large	intestine
35	chr5:74013000-74027800	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr5:74013400-74027200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr5:74013400-74047400	Strong transcription	Adipose Nuclei	Adipose
38	chr5:74013600-74028800	Strong transcription	HSMM	muscle
39	chr5:74013800-74024400	Strong transcription	Osteobl	bone
40	chr5:74014400-74047800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr5:74014400-74051600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr5:74014600-74025000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr5:74014800-74023600	Strong transcription	Skeletal Muscle Female	skeletal muscle
44	chr5:74015200-74048600	Weak transcription	Stomach Mucosa	stomach
45	chr5:74016000-74023400	Strong transcription	Ovary	ovary
46	chr5:74016000-74027400	Strong transcription	Fetal Muscle Leg	muscle
47	chr5:74016400-74052400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr5:74016600-74022800	Weak transcription	Fetal Stomach	stomach
49	chr5:74016600-74026400	Weak transcription	Lung	lung
50	chr5:74016600-74026800	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links