Variant report

Variant	rs6453081
Chromosome Location	chr5:74063069-74063070
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:538)
CpG islands
(count:122)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:538 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr5:74062195-74063174	HepG2	liver:	n/a	chr5:74062377-74062388 chr5:74062373-74062388
2	POLR2A	chr5:74062564-74063886	SK-N-MC	brain:	n/a	n/a
3	SIN3AK20	chr5:74062370-74063782	MCF-7	breast:	n/a	n/a
4	ELF1	chr5:74062565-74063423	K562	blood:	n/a	chr5:74062946-74062959
5	GABPA	chr5:74062346-74063831	MCF-7	breast:	n/a	chr5:74063007-74063014
6	POLR2A	chr5:74062566-74063373	GM12878	blood:	n/a	n/a
7	USF1	chr5:74062786-74063216	SK-N-SH	brain:	n/a	n/a
8	POLR2A	chr5:74062666-74063267	HepG2	liver:	n/a	n/a
9	MYC	chr5:74062700-74063610	K562	blood:	n/a	n/a
10	CTCF	chr5:74062980-74063130	HMEC	breast:	n/a	n/a
11	SP1	chr5:74062729-74063230	HepG2	liver:	n/a	n/a
12	GABPA	chr5:74062359-74063710	SK-N-SH	brain:	n/a	chr5:74063007-74063014
13	POLR2A	chr5:74062516-74063424	K562	blood:	n/a	n/a
14	ELK1	chr5:74062550-74063605	Hela-S3	cervix:	n/a	chr5:74062947-74062956 chr5:74062947-74062956
15	MAFK	chr5:74062819-74063321	K562	blood:	n/a	n/a
16	YY1	chr5:74062717-74063214	ECC-1	luminal epithelium:	n/a	n/a
17	YY1	chr5:74062866-74063250	A549	lung:	n/a	n/a
18	ZBTB33	chr5:74062750-74063215	A549	lung:	n/a	n/a
19	GABPA	chr5:74062378-74063769	SK-N-SH	brain:	n/a	chr5:74063007-74063014
20	TCF12	chr5:74062562-74063374	ECC-1	luminal epithelium:	n/a	n/a
21	YY1	chr5:74062577-74063659	A549	lung:	n/a	n/a
22	CREB1	chr5:74062760-74063226	ECC-1	luminal epithelium:	n/a	n/a
23	MAX	chr5:74062210-74063798	A549	lung:	n/a	n/a
24	MYC	chr5:74062671-74063185	MCF-7	breast:	n/a	n/a
25	TEAD4	chr5:74062767-74063205	K562	blood:	n/a	n/a
26	PBX3	chr5:74062785-74063331	A549	lung:	n/a	n/a
27	ZKSCAN1	chr5:74062712-74063232	Hela-S3	cervix:	n/a	n/a
28	GTF2F1	chr5:74062177-74063825	Hela-S3	cervix:	n/a	n/a
29	BCLAF1	chr5:74062776-74063288	K562	blood:	n/a	chr5:74062947-74062956
30	TAF1	chr5:74062815-74063189	PFSK-1	brain:	n/a	n/a
31	POLR2A	chr5:74062537-74063800	U87	brain:	n/a	n/a
32	MAZ	chr5:74062348-74063598	K562	blood:	n/a	n/a
33	FOSL2	chr5:74062709-74063343	A549	lung:	n/a	n/a
34	REST	chr5:74062617-74063232	SK-N-SH	brain:	n/a	chr5:74062707-74062714 chr5:74063220-74063227
35	USF1	chr5:74062789-74063138	ECC-1	luminal epithelium:	n/a	n/a
36	POLR2A	chr5:74062690-74063845	MCF10A-Er-Src	breast:	n/a	n/a
37	TCF12	chr5:74062859-74063163	GM12878	blood:	n/a	n/a
38	SRF	chr5:74062588-74063435	HCT-116	colon:	n/a	n/a
39	SRF	chr5:74062788-74063173	GM12878	blood:	n/a	n/a
40	MYC	chr5:74062256-74063509	NB4	blood:	n/a	n/a
41	REST	chr5:74062756-74063198	PFSK-1	brain:	n/a	n/a
42	HCFC1	chr5:74062349-74063632	K562	blood:	n/a	n/a
43	RAD21	chr5:74062808-74063209	H1-hESC	embryonic stem cell:	n/a	n/a
44	MAFK	chr5:74062250-74063177	HepG2	liver:	n/a	chr5:74062377-74062388 chr5:74062373-74062388
45	POLR2A	chr5:74062583-74063536	GM12892	blood:	n/a	n/a
46	TCF12	chr5:74062754-74063231	A549	lung:	n/a	n/a
47	ZNF384	chr5:74062698-74063176	K562	blood:	n/a	n/a
48	TEAD4	chr5:74062763-74063257	HepG2	liver:	n/a	n/a
49	MYC	chr5:74062221-74063814	K562	blood:	n/a	n/a
50	ELF1	chr5:74062721-74063408	GM12878	blood:	n/a	chr5:74062946-74062959

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:74063056-74063106	NH-A	brain:	n/a
2	chr5:74063060-74063110	HUVEC	blood vessel:	n/a
3	chr5:74063056-74063106	PrEC	prostate:	n/a
4	chr5:74063056-74063106	HL-60	blood:	n/a
5	chr5:74063060-74063110	SAEC	small airway:	n/a
6	chr5:74063060-74063110	Caco-2	colon:	n/a
7	chr5:74063060-74063110	PANC-1	pancreas:	n/a
8	chr5:74063056-74063106	A549	lung:	n/a
9	chr5:74063056-74063106	GM19239	blood:	n/a
10	chr5:74063056-74063106	Caco-2	colon:	n/a
11	chr5:74063060-74063110	NHBE	bronchial:	n/a
12	chr5:74063056-74063106	AoSMC	blood vessel:	n/a
13	chr5:74063060-74063110	HRE	kidney:	n/a
14	chr5:74063056-74063106	NHBE	bronchial:	n/a
15	chr5:74063056-74063106	AG10803	skin:	n/a
16	chr5:74063060-74063110	NH-A	brain:	n/a
17	chr5:74063060-74063110	Jurkat	blood:	n/a
18	chr5:74063056-74063106	PANC-1	pancreas:	n/a
19	chr5:74063060-74063110	HCM	heart:	n/a
20	chr5:74063056-74063106	AG04450	lung:	fetal
21	chr5:74063056-74063106	AG04449	skin:	fetal
22	chr5:74063060-74063110	AG04449	skin:	fetal
23	chr5:74063056-74063106	HepG2	liver:	n/a
24	chr5:74063060-74063110	NB4	blood:	n/a
25	chr5:74063056-74063106	CMK	blood:	n/a
26	chr5:74063056-74063106	RPTEC	kidney:	n/a
27	chr5:74063056-74063106	K562	blood:	n/a
28	chr5:74063060-74063110	HEK293	kidney:	embryo
29	chr5:74063056-74063106	HCF	heart:	n/a
30	chr5:74063056-74063106	ECC-1	luminal epithelium:	n/a
31	chr5:74063060-74063110	PrEC	prostate:	n/a
32	chr5:74063056-74063106	NT2-D1	testis:	n/a
33	chr5:74063060-74063110	GM12891	blood:	n/a
34	chr5:74063056-74063106	BE2_C	brain:	n/a
35	chr5:74063056-74063106	Hepatocyte	liver:	n/a
36	chr5:74063056-74063106	AG09309	skin:	n/a
37	chr5:74063060-74063110	HEEpiC	esophagus:	n/a
38	chr5:74063060-74063110	SK-N-SH_RA	brain:	n/a
39	chr5:74063056-74063106	MCF10A-Er-Src	breast:	n/a
40	chr5:74063056-74063106	HEK293	kidney:	embryo
41	chr5:74063060-74063110	BE2_C	brain:	n/a
42	chr5:74063060-74063110	HIPEpiC	eye:	n/a
43	chr5:74063060-74063110	HNPCEpiC	eye:	n/a
44	chr5:74063060-74063110	NT2-D1	testis:	n/a
45	chr5:74063060-74063110	CMK	blood:	n/a
46	chr5:74063060-74063110	Hela-S3	cervix:	n/a
47	chr5:74063056-74063106	HIPEpiC	eye:	n/a
48	chr5:74063056-74063106	SAEC	small airway:	n/a
49	chr5:74063060-74063110	MCF10A-Er-Src	breast:	n/a
50	chr5:74063060-74063110	MCF-7	breast:	n/a

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:73979647..73982006-chr5:74061742..74064417,2	K562	blood:
2	chr5:73980885..73983030-chr5:74062980..74064496,2	MCF-7	breast:
3	chr5:74062787..74065047-chr5:74073990..74076959,3	MCF-7	breast:
4	chr5:73978938..73982006-chr5:74061565..74064417,3	K562	blood:
5	chr16:33965082..33965611-chr5:74062938..74063440,2	K562	blood:

No data

Variant related genes	Relation type
NSA2	TF binding region
GFM2	TF binding region
NSA2	CpG island
GFM2	CpG island
ENSG00000199645	Chromatin interaction
ENSG00000049860	Chromatin interaction
ENSG00000200434	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10515190	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11746069	0.84[YRI][hapmap]
rs16872269	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872340	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872352	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs1979014	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2100032	1.00[EUR][1000 genomes]
rs2100034	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35080306	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3932895	0.83[AFR][1000 genomes]
rs6897850	0.88[YRI][hapmap]
rs73116712	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73116725	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73116733	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs820830	0.83[ASW][hapmap];0.82[LWK][hapmap];0.81[MKK][hapmap];0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598653	chr5:73992881-74095542	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74061000-74064600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:74061200-74063800	Active TSS	iPS-18 Cell Line	embryonic stem cell
3	chr5:74061200-74064400	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr5:74061400-74063600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:74061400-74063800	Active TSS	NHLF	lung
6	chr5:74061400-74064000	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr5:74061400-74064000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr5:74061400-74064000	Active TSS	Fetal Kidney	kidney
9	chr5:74061400-74064000	Active TSS	NHDF-Ad	bronchial
10	chr5:74061400-74064200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr5:74061400-74064400	Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr5:74061600-74064000	Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr5:74061600-74064000	Active TSS	A549	lung
14	chr5:74061600-74064000	Active TSS	GM12878-XiMat	blood
15	chr5:74061800-74063600	Active TSS	NH-A	brain
16	chr5:74061800-74063800	Active TSS	HSMM	muscle
17	chr5:74061800-74064200	Active TSS	H9 Cell Line	embryonic stem cell
18	chr5:74061800-74064400	Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr5:74061800-74064600	Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr5:74062000-74063600	Active TSS	Brain Angular Gyrus	brain
21	chr5:74062000-74063600	Active TSS	Pancreatic Islets	Pancreatic Islet
22	chr5:74062000-74063600	Active TSS	Right Ventricle	heart
23	chr5:74062000-74063600	Active TSS	Small Intestine	intestine
24	chr5:74062000-74063600	Active TSS	Stomach Mucosa	stomach
25	chr5:74062000-74063800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr5:74062000-74063800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr5:74062000-74063800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr5:74062000-74063800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr5:74062000-74063800	Bivalent/Poised TSS	HepG2	liver
30	chr5:74062000-74064000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
31	chr5:74062000-74064000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr5:74062000-74064000	Active TSS	Breast Myoepithelial Primary Cells	Breast
33	chr5:74062000-74064000	Active TSS	Esophagus	oesophagus
34	chr5:74062000-74064000	Active TSS	Psoas Muscle	Psoas
35	chr5:74062200-74063400	Active TSS	Primary B cells from peripheral blood	blood
36	chr5:74062200-74063400	Active TSS	Primary T cells fromperipheralblood	blood
37	chr5:74062200-74063400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
38	chr5:74062200-74063400	Active TSS	Colon Smooth Muscle	Colon
39	chr5:74062200-74063400	Active TSS	HUVEC	blood vessel
40	chr5:74062200-74063600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr5:74062200-74063600	Active TSS	Primary hematopoietic stem cells short term culture	blood
42	chr5:74062200-74063600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
43	chr5:74062200-74063600	Active TSS	Primary T helper naive cells from peripheral blood	blood
44	chr5:74062200-74063600	Active TSS	Primary T helper cells PMA-I stimulated	--
45	chr5:74062200-74063600	Active TSS	Primary T killer memory cells from peripheral blood	blood
46	chr5:74062200-74063600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr5:74062200-74063600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr5:74062200-74063600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr5:74062200-74063600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr5:74062200-74063600	Active TSS	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links