Variant report

Variant	rs16872340
Chromosome Location	chr5:74148228-74148229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr5:74147906-74148249	GM12891	blood:	n/a	chr5:74148055-74148077 chr5:74148067-74148077
2	FOXA2	chr5:74148054-74148318	HepG2	liver:	n/a	n/a
3	POLR2A	chr5:74147820-74148264	GM12891	blood:	n/a	n/a
4	CEBPB	chr5:74147694-74148246	A549	lung:	n/a	n/a

Variant related genes	Relation type
FAM169A	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10515190	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11746069	0.84[YRI][hapmap]
rs16872269	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872352	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1979014	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2100032	0.82[EUR][1000 genomes]
rs2100034	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35080306	1.00[ASN][1000 genomes]
rs6453081	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6897850	0.88[YRI][hapmap]
rs73116712	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73116725	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73116733	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs820830	0.83[ASW][hapmap];0.82[LWK][hapmap];0.81[MKK][hapmap];0.84[YRI][hapmap]

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74069000-74153000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:74140200-74157800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:74140600-74160000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:74142800-74151000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:74143600-74149200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr5:74144400-74149400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr5:74144600-74148800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr5:74145600-74149200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:74146000-74148400	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr5:74146000-74151200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:74146200-74148600	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr5:74146200-74148800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr5:74146400-74148600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr5:74146400-74149400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr5:74146600-74148600	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr5:74146600-74149400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr5:74146800-74148400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr5:74146800-74148600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr5:74146800-74148800	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr5:74147000-74148600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr5:74147000-74149200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr5:74147200-74150000	Enhancers	HepG2	liver
23	chr5:74147200-74151000	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr5:74147400-74148800	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr5:74147400-74151200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr5:74147400-74161000	Weak transcription	Primary T cells from cord blood	blood
27	chr5:74147600-74148400	Active TSS	Adipose Nuclei	Adipose
28	chr5:74147600-74148600	Enhancers	NHLF	lung
29	chr5:74147600-74149400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr5:74147800-74148400	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr5:74147800-74148400	Flanking Active TSS	A549	lung
32	chr5:74147800-74148600	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr5:74147800-74148600	Enhancers	Fetal Thymus	thymus
34	chr5:74147800-74149000	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr5:74147800-74149400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr5:74148000-74148400	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr5:74148000-74148400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr5:74148000-74148400	Flanking Active TSS	Liver	Liver
39	chr5:74148000-74148400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
40	chr5:74148000-74148600	Enhancers	H9 Cell Line	embryonic stem cell
41	chr5:74148000-74148600	Enhancers	Osteobl	bone
42	chr5:74148000-74148800	Enhancers	Brain Angular Gyrus	brain
43	chr5:74148000-74149000	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr5:74148000-74149000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr5:74148000-74149400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr5:74148200-74148400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr5:74148200-74148400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr5:74148200-74148400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr5:74148200-74148400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
50	chr5:74148200-74148400	Enhancers	NHDF-Ad	bronchial

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