Variant report

Variant	rs73116725
Chromosome Location	chr5:74107330-74107331
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:74107318..74109922-chr5:74110402..74112776,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10515190	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872269	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872340	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872352	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1979014	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2100032	1.00[EUR][1000 genomes]
rs2100034	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35080306	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6453081	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73116712	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73116717	0.81[AFR][1000 genomes]
rs73116733	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74064000-74112400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:74064400-74134600	Weak transcription	Fetal Brain Male	brain
3	chr5:74066600-74112800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr5:74069000-74153000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:74070000-74111600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr5:74074800-74143400	Weak transcription	Primary B cells from cord blood	blood
7	chr5:74087600-74112000	Weak transcription	A549	lung
8	chr5:74087600-74130000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr5:74095800-74146000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr5:74096000-74112400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr5:74096000-74113400	Weak transcription	Brain Angular Gyrus	brain
12	chr5:74096000-74131000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr5:74096000-74134200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr5:74096000-74134200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr5:74096000-74137200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr5:74096000-74137200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr5:74096200-74134200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr5:74096400-74109200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr5:74096400-74111400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr5:74096400-74111400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr5:74096400-74129600	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr5:74096400-74133800	Weak transcription	Fetal Thymus	thymus
23	chr5:74097400-74147400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr5:74097800-74108600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr5:74097800-74114000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr5:74098000-74108000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr5:74098000-74108400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr5:74098200-74129200	Weak transcription	Primary T cells from cord blood	blood
29	chr5:74101000-74124000	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr5:74101200-74107400	Weak transcription	HepG2	liver
31	chr5:74101200-74108400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr5:74101200-74112200	Weak transcription	Brain Anterior Caudate	brain
33	chr5:74101200-74131600	Weak transcription	Dnd41	blood
34	chr5:74101200-74132200	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr5:74101200-74136400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr5:74103400-74111400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr5:74105400-74110600	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr5:74105600-74110600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr5:74106000-74107600	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr5:74106200-74108000	Enhancers	HMEC	breast
41	chr5:74106200-74109600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr5:74106600-74107400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr5:74106600-74108000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr5:74106600-74108000	Enhancers	NHEK	skin
45	chr5:74106800-74109800	Strong transcription	H1 Cell Line	embryonic stem cell
46	chr5:74106800-74110800	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr5:74107000-74107800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr5:74107000-74109800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr5:74107000-74111800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links