Variant report

Variant	rs6900352
Chromosome Location	chr6:33522000-33522001
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs6457731	1.00[EUR][1000 genomes]
rs6906305	1.00[EUR][1000 genomes]
rs6907610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742916	1.00[AMR][1000 genomes]
rs7770412	1.00[AMR][1000 genomes]
rs9688415	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763548	chr6:33496201-33524779	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33516000-33523800	Weak transcription	GM12878-XiMat	blood
2	chr6:33516800-33537600	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr6:33517800-33524800	Weak transcription	Esophagus	oesophagus
4	chr6:33519800-33524800	Weak transcription	Hela-S3	cervix
5	chr6:33521200-33524000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:33521200-33524200	Weak transcription	HMEC	breast
7	chr6:33521200-33533800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:33521400-33523600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:33521400-33525200	Weak transcription	NHEK	skin
10	chr6:33521800-33523600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links