Variant report

Variant	rs7742916
Chromosome Location	chr6:33470466-33470467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33463213..33466886-chr6:33468926..33471484,3	K562	blood:
2	chr6:33463213..33467360-chr6:33468926..33472563,4	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10452588	1.00[ASN][1000 genomes]
rs10452603	1.00[ASN][1000 genomes]
rs10452604	1.00[ASN][1000 genomes]
rs55644128	1.00[ASN][1000 genomes]
rs56386969	1.00[ASN][1000 genomes]
rs58032164	1.00[ASN][1000 genomes]
rs58099519	1.00[ASN][1000 genomes]
rs61081787	1.00[ASN][1000 genomes]
rs6457729	1.00[ASN][1000 genomes]
rs6457730	1.00[ASN][1000 genomes]
rs6457731	1.00[ASN][1000 genomes]
rs6900352	1.00[AMR][1000 genomes]
rs6905849	1.00[ASN][1000 genomes]
rs6906166	1.00[ASN][1000 genomes]
rs6906210	1.00[ASN][1000 genomes]
rs6906305	1.00[ASN][1000 genomes]
rs6906395	1.00[ASN][1000 genomes]
rs6906733	1.00[ASN][1000 genomes]
rs6907610	1.00[AMR][1000 genomes]
rs6909362	1.00[ASN][1000 genomes]
rs6924409	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6929279	1.00[ASN][1000 genomes]
rs6929336	1.00[ASN][1000 genomes]
rs6929647	1.00[ASN][1000 genomes]
rs6929691	1.00[ASN][1000 genomes]
rs73741934	1.00[ASN][1000 genomes]
rs73743727	1.00[ASN][1000 genomes]
rs73743728	1.00[ASN][1000 genomes]
rs73743729	1.00[ASN][1000 genomes]
rs73743730	1.00[ASN][1000 genomes]
rs7769296	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770412	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9461870	1.00[ASN][1000 genomes]
rs9469449	1.00[ASN][1000 genomes]
rs9469450	1.00[ASN][1000 genomes]
rs9469455	1.00[ASN][1000 genomes]
rs9469456	1.00[ASN][1000 genomes]
rs9469457	1.00[ASN][1000 genomes]
rs9469460	1.00[ASN][1000 genomes]
rs9469461	1.00[ASN][1000 genomes]
rs9469462	1.00[ASN][1000 genomes]
rs9469464	1.00[ASN][1000 genomes]
rs9469465	1.00[ASN][1000 genomes]
rs9469466	1.00[ASN][1000 genomes]
rs9469467	1.00[ASN][1000 genomes]
rs9688415	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv521506	chr6:33468151-33480738	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv524010	chr6:33468151-33505981	Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33453000-33474000	Weak transcription	Right Atrium	heart
2	chr6:33470000-33470800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:33470400-33470800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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