Variant report

Variant	rs6901407
Chromosome Location	chr6:121056850-121056851
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10457397	0.81[EUR][1000 genomes]
rs11153944	0.81[EUR][1000 genomes]
rs11153956	0.91[EUR][1000 genomes]
rs11153957	0.91[EUR][1000 genomes]
rs12193834	0.91[EUR][1000 genomes]
rs12193885	0.91[EUR][1000 genomes]
rs12196688	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12213687	0.91[EUR][1000 genomes]
rs1339017	0.90[EUR][1000 genomes]
rs1933820	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6902043	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6935352	0.91[EUR][1000 genomes]
rs6935477	0.91[EUR][1000 genomes]
rs7741833	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7757463	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9401327	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3366823	chr6:121043302-121064055	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121056600-121058200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:121056600-121058600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:121056800-121058000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:121056800-121058000	Enhancers	HMEC	breast
5	chr6:121056800-121058800	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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