Variant report

Variant	rs9401327
Chromosome Location	chr6:121054045-121054046
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10457397	0.86[EUR][1000 genomes]
rs11153944	0.86[EUR][1000 genomes]
rs11153956	0.96[EUR][1000 genomes]
rs11153957	0.96[EUR][1000 genomes]
rs12193834	0.96[EUR][1000 genomes]
rs12193885	0.96[EUR][1000 genomes]
rs12196688	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12213687	0.96[EUR][1000 genomes]
rs1339017	0.96[EUR][1000 genomes]
rs1933820	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6901407	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6902043	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6933679	0.81[ASN][1000 genomes]
rs6935352	0.97[EUR][1000 genomes]
rs6935477	0.97[EUR][1000 genomes]
rs7741833	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7757463	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3384168	chr6:121043302-121056680	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
2	esv3366823	chr6:121043302-121064055	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121052800-121056600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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