Variant report

Variant	rs10457397
Chromosome Location	chr6:120967227-120967228
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11153944	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11153956	0.89[EUR][1000 genomes]
rs11153957	0.88[EUR][1000 genomes]
rs11961543	0.95[ASN][1000 genomes]
rs11969028	0.98[ASN][1000 genomes]
rs12193834	0.89[EUR][1000 genomes]
rs12193885	0.89[EUR][1000 genomes]
rs12196688	0.81[EUR][1000 genomes]
rs12213687	0.89[EUR][1000 genomes]
rs1339017	0.89[EUR][1000 genomes]
rs1933820	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs6901407	0.81[EUR][1000 genomes]
rs6902043	0.94[EUR][1000 genomes]
rs6935352	0.89[EUR][1000 genomes]
rs6935477	0.89[EUR][1000 genomes]
rs7741833	0.93[EUR][1000 genomes]
rs7757463	0.85[EUR][1000 genomes]
rs9401327	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753290	chr6:120309301-120979301	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	esv2752474	chr6:120309301-120982301	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120966600-120968600	Enhancers	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links