Variant report

Variant	rs6901538
Chromosome Location	chr6:11367720-11367721
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11219669..11221481-chr6:11366413..11368482,2	MCF-7	breast:
2	chr6:11343828..11346544-chr6:11366982..11368988,2	MCF-7	breast:
3	chr6:11363261..11366684-chr6:11366769..11368460,3	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1012503	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10947217	1.00[CEU][hapmap];0.80[CHB][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11751505	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11756278	1.00[CEU][hapmap];0.87[CHB][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12661807	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17507230	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4074864	1.00[CEU][hapmap];0.80[CHB][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4301302	0.80[ASN][1000 genomes]
rs4713459	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4713474	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4713475	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4713478	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56130422	0.80[ASN][1000 genomes]
rs56144403	0.89[EUR][1000 genomes]
rs56711429	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72832925	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72832932	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72832935	0.94[EUR][1000 genomes]
rs73366900	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7740502	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9469022	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11355200-11370800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:11357200-11371200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:11357800-11370400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:11358000-11367800	Weak transcription	Small Intestine	intestine
5	chr6:11359400-11369800	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:11361200-11370600	Weak transcription	Thymus	Thymus
7	chr6:11364600-11369400	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr6:11364600-11371200	Enhancers	HUVEC	blood vessel
9	chr6:11364600-11381200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:11364800-11370400	Weak transcription	Spleen	Spleen
11	chr6:11364800-11370800	Weak transcription	Placenta	Placenta
12	chr6:11365000-11370600	Weak transcription	Fetal Thymus	thymus
13	chr6:11365400-11368000	Weak transcription	Right Atrium	heart
14	chr6:11365600-11374400	Weak transcription	Stomach Mucosa	stomach
15	chr6:11365600-11374800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr6:11365800-11369800	Weak transcription	Fetal Lung	lung
17	chr6:11366000-11367800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr6:11366000-11368400	Genic enhancers	Primary B cells from peripheral blood	blood
19	chr6:11366000-11368400	Enhancers	Primary T cells fromperipheralblood	blood
20	chr6:11366200-11368400	Enhancers	Colonic Mucosa	Colon
21	chr6:11366200-11369400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr6:11366400-11369200	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr6:11366400-11369400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr6:11366600-11368000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
25	chr6:11366600-11368000	Flanking Active TSS	GM12878-XiMat	blood
26	chr6:11366600-11368200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr6:11366600-11368400	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr6:11366600-11368600	Genic enhancers	Primary B cells from cord blood	blood
29	chr6:11366800-11368200	Flanking Active TSS	Liver	Liver
30	chr6:11366800-11368400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:11366800-11368400	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr6:11366800-11368400	Enhancers	Primary T cells from cord blood	blood
33	chr6:11366800-11368400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr6:11366800-11368400	Enhancers	Fetal Intestine Small	intestine
35	chr6:11366800-11368400	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr6:11366800-11368400	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr6:11366800-11368600	Enhancers	Adipose Nuclei	Adipose
38	chr6:11366800-11369000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr6:11366800-11369000	Enhancers	Fetal Intestine Large	intestine
40	chr6:11366800-11369400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr6:11366800-11369400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr6:11366800-11369600	Enhancers	NHEK	skin
43	chr6:11366800-11369800	Enhancers	HMEC	breast
44	chr6:11366800-11371000	Enhancers	Fetal Kidney	kidney
45	chr6:11367000-11368000	Weak transcription	Left Ventricle	heart
46	chr6:11367000-11368000	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr6:11367000-11369000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr6:11367000-11369400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:11367000-11369400	Enhancers	NH-A	brain
50	chr6:11367000-11370600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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